The Speed of Adaptation in Large Asexual Populations

In large asexual populations, beneficial mutations have to compete with each other for fixation. Here, I derive explicit analytic expressions for the rate of substitution and the mean beneficial effect of fixed mutations, under the assumptions that the population size N is large, that the mean effect of new beneficial mutations is smaller than the mean effect of new deleterious mutations, and that new beneficial mutations are exponentially distributed. As N increases, the rate of substitution approaches a constant, which is equal to the mean effect of new beneficial mutations. The mean effect of fixed mutations continues to grow logarithmically with N. The speed of adaptation, measured as the change of log fitness over time, also grows logarithmically with N for moderately large N, and it grows double-logarithmically for extremely large N. Moreover, I derive a simple formula that determines whether at given N beneficial mutations are expected to compete with each other or go to fixation independently. Finally, I verify all results with numerical simulations.Comment: 33 pages, 6 figures. Minor changes in discussion. To appear in Genetic

Irreversible and reversible modes of operation of deterministic ratchets

We discuss a problem of optimization of the energetic efficiency of a simple rocked ratchet. We concentrate on a low-temperature case in which the particle's motion in a ratchet potential is deterministic. We show that the energetic efficiency of a ratchet working adiabatically is bounded from above by a value depending on the form of ratchet potential. The ratchets with strongly asymmetric potentials can achieve ideal efficiency of unity without approaching reversibility. On the other hand we show that for any form of the ratchet potential a set of time-protocols of the outer force exist under which the operation is reversible and the ideal value of efficiency is also achieved. The mode of operation of the ratchet is still quasistatic but not adiabatic. The high values of efficiency can be preserved even under elevated temperatures

Validation of Observed Bedload Transport Pathways Using Morphodynamic Modeling

Phenomena related to braiding, including local scour and fill, channel bar development, migration and avulsion, make numerical morphodynamic modeling of braided rivers challenging. This paper investigates the performance of a Delft3D model, in a 2D depth-averaged formulation, to simulate the morphodynamics of an anabranch of the Rees River (New Zealand). Model performance is evaluated using data from field surveys collected on the falling limb of a major high flow, and using several sediment transport formulas. Initial model results suggest that there is generally good agreement between observed and modeled bed levels. However, some discrepancies in the bed level estimations were noticed, leading to bed level, water depth and water velocity estimation errors

Kondo effect in a one dimensional d-wave superconductor

We derive a solvable resonant-level type model, to describe an impurity spin coupled to zero-energy bound states localized at the edge of a one dimensional d-wave superconductor. This results in a two-channel Kondo effect with a quite unusual low-temperature thermodynamics. For instance, the local impurity susceptibility yields a finite maximum at zero temperature (but no logarithmic-divergence) due to the splitting of the impurity in two Majorana fermions. Moreover, we make comparisons with the Kondo effect occurring in a two dimensional d-wave superconductor.Comment: 9 pages, final version; To be published in Europhysics Letter

Mean-Field Equations for Spin Models with Orthogonal Interaction Matrices

We study the metastable states in Ising spin models with orthogonal interaction matrices. We focus on three realizations of this model, the random case and two non-random cases, i.e.\ the fully-frustrated model on an infinite dimensional hypercube and the so-called sine-model. We use the mean-field (or {\sc tap}) equations which we derive by resuming the high-temperature expansion of the Gibbs free energy. In some special non-random cases, we can find the absolute minimum of the free energy. For the random case we compute the average number of solutions to the {\sc tap} equations. We find that the configurational entropy (or complexity) is extensive in the range T_{\mbox{\tiny RSB}}. Finally we present an apparently unrelated replica calculation which reproduces the analytical expression for the total number of {\sc tap} solutions.Comment: 22+3 pages, section 5 slightly modified, 1 Ref added, LaTeX and uuencoded figures now independent of each other (easier to print). Postscript available http://chimera.roma1.infn.it/index_papers_complex.htm

Enhanced absorption Hanle effect on the Fg=F->Fe=F+1 closed transitions

We analyse the Hanle effect on a closed $F_g\to F_e=F_g+1$ transition. Two configurations are examined, for linear- and circular-polarized laser radiation, with the applied magnetic field collinear to the laser light wavevector. We describe the peculiarities of the Hanle signal for linearly-polarized laser excitation, characterized by narrow bright resonances at low laser intensities. The mechanism behind this effect is identified, and numerical solutions for the optical Bloch equations are presented for different transitions.Comment: to be published in J. Opt. B, special issue on Quantum Coherence and Entanglement (February 2001