Vertical distribution and respiration rates of benthic foraminifera: Contribution to aerobic remineralization in intertidal mudflats covered by Zostera noltei meadows

The present study investigates the influence of seagrass root systems on benthic hard-shelled meiofauna (foraminifera). In February and July 2011, sediment cores were collected at low tide at two sites in Arcachon lagoon, a vegetated site with Zostera noltei and a second site with bare sediments. We used the highly discriminative CellTracker™ Green fluorogenic probe technique to recognize living foraminifera and to describe foraminiferal density and diversity. Three dominant species of foraminifera were observed: Ammonia tepida, Haynesina germanica and Eggerella scabra. The two calcareous species, A. tepida and H. germanica, were preferentially found in the upper half to 1 cm of the sediment. At the vegetated site, these two species had a slightly deeper microhabitat. In the literature, both species have been described alive in much deeper sediment layers, possibly due to false positives from the Rose Bengal staining method. These two species also showed 1) higher densities at the site with Z. noltei, 2) a higher density in February when conditions were supposed optimal due to a microphytobenthos bloom, and 3) dissolved calcitic shells in July, probably resulting from a lower pH. The agglutinated species E. scabra was present alive down to at least 7 cm depth. E. scabra showed high densities in the anoxic part of the sediment at both the vegetated and bare sites, with a substantially higher density in summer at the site with bare sediments. Its presence at depth may be related to its trophic requirements; this species could be less dependent on labile organic matter than A. tepida and H. germanica. On this intertidal mudflat, the foraminiferal contribution to aerobic carbon remineralization, based on respiration rate measurements, can account for up to 7% of the diffusive oxygen uptake, almost five times more than the maximum contribution recorded in open marine environments (300 m depth) in the Bay of Biscay

Effect of GA 3 and paclobutrazol on adventitious shoot regeneration of two Pelargonium sp

This study had two aims. The first was to improve the regeneration efficiency of Pelargonium leaf discs by adventitious budding. The second was to test the effect of gibberellic acid (GA 3) and paclobutrazol (PBZ) on callus formation and adventitious shoot regeneration in Pelargonium before using genetic transformation of this species for functional validation of genes involved in the process of GA regulation. GA 3 and paclobutrazol (an inhibitor of GA synthesis pathway) were added (together or separately) in the shoot regeneration media of two Pelargonium species, Pelargonium * hortorum \u27Panache sud\u27 (\u27P.sud\u27) and Pelargonium * domesticum \u27Autumn haze\u27 (\u27 P.dom\u27). In both cases, GA 3 applied alone, completely inhibited the bud regeneration. Moreover, the rate of callus formation decreased drastically when 5 M of GA 3 was applied to \u27 P. dom\u27 explants. Similar result was obtained with \u27P.sud\u27 explants using 20 M GA 3. Paclobutrazol (0.3 M) applied at the same time as GA 3 (10 M) could partially restore regeneration process of \u27 P. dom\u27. For \u27 P. dom\u27, the use of paclobutrazol alone increased callus formation and slightly improved the rate of regeneration. Moreover, initiated buds had a better appearance. For \u27P. sud\u27, which had an abundant callusing, paclobutrazol did not improve regeneration and led to hyperhydric shoots

Benthic oxygen exchange over a heterogeneous Zostera noltei meadow in a temperate coastal ecosystem

Seagrass meadows support intense but highly variable benthic metabolic rates that still need to be better evaluated to determine an accurate trophic status. The present study assessed how seagrasses and associated benthic macrofauna control spatiotemporal changes in benthic oxygen exchanges within a temperate bay. Based on seasonal sampling over a complete year cycle, the diffusive oxygen uptake (DOU), community respiration (CR) and gross primary production (GPP) were measured in a Zostera noltei meadow within Arcachon Bay, taking into account its spatial heterogeneity. Oxygen fluxes were assessed in sediment cores, within which benthic macrofauna and seagrass abundances and biomasses were quantified. The presence of Z. noltei did not significantly affect the DOU. Seasonal changes in CR and GPP correlated strongly with temperature in the presence of Z. noltei. The characteristics of benthic macrofauna associated with Z. noltei only weakly affected seasonal changes in CR. High spatial changes in both GPP and CR were mainly driven by the aboveground biomass of Z. noltei. When extrapolated to the whole intertidal area of the bay, in spite of limitations, our results suggest (1) overall higher contributions to CR and GPP from the seagrass meadow than from bare sediments, even though alternative primary producers in bare sediments (likely microphytobenthos) contributed significantly during winter; (2) an annual decrease in CR and GPP of 35 and 41%, respectively, resulting from the decline in Z. noltei of 25% between 2005 and 2007; and (3) a strong seasonality in the magnitude of this decrease, which was high during autumn and low during winter.

Cathodoluminescence of Rare Earth Doped Zircons. I. Their Possible Use as Reference Materials

Synthetic zircon crystals (ZrSiO4), undoped and doped with Y3+, La3+, Ce3+, Pr3+, Nd3+, Sm3+, Eu3+, Gd3+, Tb3+, Dy3+, Ho3+, Er3+, Tm3+, Yb3+, Lu3+, were grown from a flux consisting of a mixture of Li2MoO4 and MoO3 heated to 1125°C and then cooled to 750°C. The cathodoluminescence (CL) spectra of these zircons were analyzed at room-temperature and near liquid nitrogen temperature with a CL spectrometer attached to a scanning electron microscope (SEM). This study highlights the complexity of the intrinsic emission band extending from 200 to 500 nm. The relative intensities of the major emission band centered at 230 nm (5.4 eV) and peaks of less energy were found to depend upon the crystallographic orientation of the crystals. Sm3+, Eu3+, Gd3+, Tb3+, Dy3+, Ho3+, Er3+ and Tm3+-doped zircons display sharp emission peaks being characteristic of the doping rare-earth element (REE). These lines are frequently multiplets but only the average position of the peaks are reported because of the instrumental conditions used in this study. The CL intensities of the intrinsic and extrinsic features were found to depend on the crystal orientation, and numerous experimental factors such as the electron beam energy and the beam current density

Multi-scale investigation of uranium attenuation by arsenic at an abandoned uranium mine, South Terras

Detailed mineralogical analysis of soils from the UK’s historical key uranium mine, South Terras, was performed to elucidate the mechanisms of uranium degradation and migration in the 86 years since abandonment. Soils were sampled from the surface (0 – 2 cm) and near-surface (25 cm) in two distinct areas of ore processing activities. Bulk soil analysis revealed the presence of high concentrations of uranium (<1690 ppm), arsenic (1830 ppm) and beryllium (~250 ppm), suggesting pedogenic weathering of the country rock and ore extraction processes to be the mechanisms of uranium ore degradation. Micro-focus XRF analysis indicated the association of uranium with arsenic, phosphate and copper; µ-XRD data confirmed the presence of the uranyl-arsenate minerals metazeunerite (Cu(UO2)2(AsO4)2·8H2O) and metatorbernite (Cu(UO2)2(PO4)2·8H2O) to be ubiquitous. Our data are consistent with the solid solution of these two uranyl-mica minerals, not previously observed at uranium-contaminated sites. Crystallites of uranyl-mica minerals were observed to coat particles of jarosite and muscovite, suggesting that the mobility of uranium from degraded ores is attenuated by co-precipitation with arsenic and phosphate, which was not previously considered at this site

Cathodoluminescence of Rare Earth Doped Zircons. II. Relationship Between the Distribution of the Doping Elements and the Contrasts of Images

Cathodoluminescence (CL) color photographs using an optical CL microscope with a cold cathode electron gun are compared with non-spectrally resolved (polychromatic) and selected wavelength CL images obtained by means of a scanning electron microscope equipped with a CL spectrometer. It is the aim of this paper to show how the interpretation of the contrasts of CL images depends on the knowledge of the CL photon energy distributions participating to the observed contrasts as well as the matrix effects modifying the number of emitted photons compared to that of generated photons. It is shown that the impurities different from the rare earth elements (REE) activators are responsible for charge trapping mechanisms leading to the development of internal electric fields modifying the energy and spatial distribution of the electrons within the insulators and consequently modifying the relative intensities of the intrinsic (host lattice) emission and characteristic emission of a REE activator. In addition, the mechanisms of production of photons must be better understood before trying to express the CL intensity of a monochromatic line as a function of the corresponding REE activator

Electron Microprobe Analysis and Proton Induced X-Ray Spectrometry Applied to Trace Element Analysis in Sulfides: Problems and Prospects

The complementary techniques of EPMA and micro-PIXE are reviewed in the context of spatially resolved trace element analysis of sulfide minerals. Attention is focussed on methods of standardization and of fitting EDX spectra. Sphalerites and chalcopyrites from various sources are used as specimens. For Ag in chalcopyrites, the two techniques agree well. Sphalerites pose problems such as Zn-Fe replacement and the presence of minor elements, both of which influence matrix corrections ; these are addressed in detail. The necessity for absorbers in the micro-PIXE work prevents detection of minor elements lighter than Zn ; these are determined by EPMA and the results used in the micro-PIXE fitting and matrix corrections. For Cd, Ag, Ga, Ge there is acceptable agreement between the two techniques given uncertainties and constraints on samples, but EPMA results for Hg are notably lower than micro-PIXE results. The improvement in detection limits afforded by micro-PIXE over EPMA in these sulfide minerals ranges from ~ 3 for Ga, Ge, Hg to 10-30 for Se, Ag, Cd, In ; possible further gains are discussed for both techniques

Cathodoluminescence Applied to the Microcharacterization of Mineral Materials: A Present Status in Experimentation and Interpretation

Experimentation and interpretation of cathodoluminescence (CL) microscopy and spectroscopy applied to the microcharacterization of material minerals are reviewed. The origins of the intrinsic (host lattice) and extrinsic (impurities) luminescence emissions in crystals are briefly discussed. Merits and limitations of the available techniques are illustrated. CL emission changes as a function of the incident electron dose are illustrated for the case of natural quartz and sphalerite (ZnS) crystals. These effects are discussed in terms of the development of bulk charging, production of heat, diffusion of impurities, and creation of lattice defects induced by the incident ionizing particles. Although CL emission is mostly extrinsic in origin there is no general rule for identifying the nature of impurities from the CL emission spectra of minerals. However there is potential for using CL spectroscopy for trace element analysis as presented for the case of minerals containing rare-earth luminescent ions. The CL emission is a signature of the crystal-chemistry properties of minerals and hence contains potential genetic information. Some of the applications of CL emissions in the geosciences are summarized

Thiolutin is a zinc chelator that inhibits the Rpn11 and other JAMM metalloproteases

Thiolutin is a disulfide-containing antibiotic and anti-angiogenic compound produced by Streptomyces. Its biological targets are not known. We show that reduced thiolutin is a zinc chelator that inhibits the JAB1/MPN/Mov34 (JAMM) domain–containing metalloprotease Rpn11, a deubiquitinating enzyme of the 19S proteasome. Thiolutin also inhibits the JAMM metalloproteases Csn5, the deneddylase of the COP9 signalosome; AMSH, which regulates ubiquitin-dependent sorting of cell-surface receptors; and BRCC36, a K63-specific deubiquitinase of the BRCC36-containing isopeptidase complex and the BRCA1–BRCA2-containing complex. We provide evidence that other dithiolopyrrolones also function as inhibitors of JAMM metalloproteases

Contribution of the Residual Body in the Spatial Organization of Toxoplasma gondii Tachyzoites within the Parasitophorous Vacuole

Toxoplasma gondii proliferates and organizes within a parasitophorous vacuole in rosettes around a residual body and is surrounded by a membranous nanotubular network whose function remains unclear. Here, we characterized structure and function of the residual body in intracellular tachyzoites of the RH strain. Our data showed the residual body as a body limited by a membrane formed during proliferation of tachyzoites probably through the secretion of components and a pinching event of the membrane at the posterior end. It contributes in the intravacuolar parasite organization by the membrane connection between the tachyzoites posterior end and the residual body membrane to give place to the rosette conformation. Radial distribution of parasites in rosettes favors an efficient exteriorization. Absence of the network and presence of atypical residual bodies in a ΔGRA2-HXGPRT knock-out mutant affected the intravacuolar organization of tachyzoites and their exteriorization