The smooth cut-off Hierarchical Reference Theory of fluids

We provide a comprehensive presentation of the Hierarchical Reference Theory (HRT) in the smooth cut-off formulation. A simple and self-consistent derivation of the hierarchy of differential equations is supplemented by a comparison with the known sharp cut-off HRT. Then, the theory is applied to a hard core Yukawa fluid (HCYF): a closure, based on a mean spherical approximation ansatz, is studied in detail and its intriguing relationship to the self consistent Ornstein-Zernike approximation is discussed. The asymptotic properties, close to the critical point are investigated and compared to the renormalization group results both above and below the critical temperature. The HRT free energy is always a convex function of the density, leading to flat isotherms in the two-phase region with a finite compressibility at coexistence. This makes HRT the sole liquid-state theory able to obtain directly fluid-fluid phase equilibrium without resorting to the Maxwell construction. The way the mean field free energy is modified due to the inclusion of density fluctuations suggests how to identify the spinodal curve. Thermodynamic properties and correlation functions of the HCYF are investigated for three values of the inverse Yukawa range: z=1.8, z=4 and z=7 where Monte Carlo simulations are available. The stability of the liquid-vapor critical point with respect to freezing is also studied.Comment: 23 pages, 15 figures, 1 tabl

Solvation forces in Ising films with long-range boundary fields: density-matrix renormalization-group study

Using the quasi-exact density-matrix renormalization-group method we calculate the solvation forces in two-dimensional Ising films of thickness L subject to identical algebraically decaying boundary fields with various decay exponents p. At the bulk critical point the solvation force acquires a universal contribution which is long-ranged in L due to the critical fluctuations, a phenomenon known as the critical Casimir effect. For p = 2, 3 and 50, we study the scaling behaviour of the solvation force along the pseudo-phase coexistence and along the critical and sub-critical isotherms.Comment: 9 pages, 6 figures, accepted to Molecular Physic

Interfacial Tensions near Critical Endpoints: Experimental Checks of EdGF Theory

Predictions of the extended de Gennes-Fisher local-functional theory for the universal scaling functions of interfacial tensions near critical endpoints are compared with experimental data. Various observations of the binary mixture isobutyric acid $+$ water are correlated to facilitate an analysis of the experiments of Nagarajan, Webb and Widom who observed the vapor-liquid interfacial tension as a function of {\it both} temperature and density. Antonow's rule is confirmed and, with the aid of previously studied {\it universal amplitude ratios}, the crucial analytic ``background'' contribution to the surface tension near the endpoint is estimated. The residual singular behavior thus uncovered is consistent with the theoretical scaling predictions and confirms the expected lack of symmetry in $(T-T_c)$. A searching test of theory, however, demands more precise and extensive experiments; furthermore, the analysis highlights, a previously noted but surprising, three-fold discrepancy in the magnitude of the surface tension of isobutyric acid $+$ water relative to other systems.Comment: 6 figure

Trapping colloids near chemical stripes via critical Casimir forces

We study theoretically and experimentally the solvent-mediated critical Casimir force acting on colloidal particles immersed in a binary liquid mixture of water and 2,6-lutidine and close to substrates which are chemically patterned with periodically alternating stripes of antagonistic adsorption preferences. These patterns are experimentally realized via microcontact printing. Upon approaching the critical demixing point of the solvent, normal and lateral critical Casimir forces generate laterally confining effective potentials for the colloids. We analyze in detail the rich behavior of the spherical colloids close to such substrates. For all patterned substrates we investigated, our measurements of these effective potentials agree with the corresponding theoretical predictions. Since both the directions and the strengths of the critical Casimir forces can be tuned by minute temperature changes, this provides a new mechanism for controlling colloids as model systems, opening encouraging perspectives for applications.Comment: Invited contribution to Molecular Physics Special Issue on Bob Evans' 65th birthda

Atlas Toolkit: Fast registration of 3D morphological datasets in the absence of landmarks

Image registration is a gateway technology for Developmental Systems Biology, enabling computational analysis of related datasets within a shared coordinate system. Many registration tools rely on landmarks to ensure that datasets are correctly aligned; yet suitable landmarks are not present in many datasets. Atlas Toolkit is a Fiji/ImageJ plugin collection offering elastic group-wise registration of 3D morphological datasets, guided by segmentation of the interesting morphology. We demonstrate the method by combinatorial mapping of cell signalling events in the developing eyes of chick embryos, and use the integrated datasets to predictively enumerate Gene Regulatory Network states

Quantum dimer models and exotic orders

We discuss how quantum dimer models may be used to provide "proofs of principle" for the existence of exotic magnetic phases in quantum spin systems.Comment: 12 pages, 6 figures. Contributed talk at the PITP-Les Houches Summer School on "Quantum Magnetism", June 200

Conformal symmetry in non-local field theories

We have shown that a particular class of non-local free field theory has conformal symmetry in arbitrary dimensions. Using the local field theory counterpart of this class, we have found the Noether currents and Ward identities of the translation, rotation and scale symmetries. The operator product expansion of the energy-momentum tensor with quasi-primary fields is also investigated.Comment: 15 pages, V2 (Some references added) V3(published version

Geometric parameterisation of pelvic bone and cartilage in contact analysis of the natural hip: an initial study

Parameterised finite element models of the human hip have the potential to allow controlled analysis of the effect of individual geometric features on the contact mechanics of the joint. However, the challenge lies in defining a set of parameters which sufficiently capture the joint geometry in order to distinguish between individuals. In this study, a simple set of parameters to describe the geometries of acetabulum and cartilage in the hip were extracted from two segmentation-based models, which were then used to generate the parameterised finite element models for the two subjects. The contact pressure and contact area at the articular surface predicted from the parameterised finite element models were compared with the results from the segmentation-based models. The differences in the predicted results between the parameterised models and segmentation-based models were found to be within 11% across seven activities simulated. In addition, the parameterised models were able to replicate features of the contact pressure/area fluctuations over the loading cycle that differed between the two subjects. These results provide confidence that the parameterised approach could be used to generate representative finite element models of the human hip for contact analysis. Such a method has the potential to be used to systematically evaluate geometric features that can be captured from simple clinical measurements and provide a cost- and time-effective approach for stratification of the acetabular geometries in the patient population

Pleosporales

One hundred and five generic types of Pleosporales are described and illustrated. A brief introduction and detailed history with short notes on morphology, molecular phylogeny as well as a general conclusion of each genus are provided. For those genera where the type or a representative specimen is unavailable, a brief note is given. Altogether 174 genera of Pleosporales are treated. Phaeotrichaceae as well as Kriegeriella, Zeuctomorpha and Muroia are excluded from Pleosporales. Based on the multigene phylogenetic analysis, the suborder Massarineae is emended to accommodate five families, viz. Lentitheciaceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae and Trematosphaeriaceae