Joint T1 and brain fiber diffeomorphic registration using the demons

International audienceImage registration is undoubtedly one of the most active areas of research in medical imaging. Within inter-individual comparison, registration should align images as well as cortical and external structures such as sulcal lines and fibers. While using image-based registration[1], neural fibers appear uniformly white giving no information to the registration. Tensor-based registration was recently proposed to improve white-matter alignment[2,3], however misregistration may also persist in regions where the tensor field appears uniform[4]. We propose an hybrid approach by extending the Diffeomorphic Demons(D)[5] registration to incorporate geometric constrains. Combining the deformation field induce by the image and the geometry, we define a mathematically sound framework to jointly register images and geometric descriptors such as fibers or sulcal lines

Anisotropic Laplace-Beltrami Operators for Shape Analysis

International audienceThis paper introduces an anisotropic Laplace-Beltrami operator for shape analysis. While keeping useful properties of the standard Laplace-Beltrami operator, it introduces variability in the directions of principal curvature, giving rise to a more intuitive and semantically meaningful diffusion process. Although the benefits of anisotropic diffusion have already been noted in the area of mesh processing (e.g. surface regularization), focusing on the Laplacian itself, rather than on the diffusion process it induces, opens the possibility to effectively replace the omnipresent Laplace-Beltrami operator in many shape analysis methods. After providing a mathematical formulation and analysis of this new operator, we derive a practical implementation on discrete meshes. Further, we demonstrate the effectiveness of our new operator when employed in conjunction with different methods for shape segmentation and matching

Statistical Computing on Non-Linear Spaces for Computational Anatomy

International audienceComputational anatomy is an emerging discipline that aims at analyzing and modeling the individual anatomy of organs and their biological variability across a population. However, understanding and modeling the shape of organs is made difficult by the absence of physical models for comparing different subjects, the complexity of shapes, and the high number of degrees of freedom implied. Moreover, the geometric nature of the anatomical features usually extracted raises the need for statistics on objects like curves, surfaces and deformations that do not belong to standard Euclidean spaces. We explain in this chapter how the Riemannian structure can provide a powerful framework to build generic statistical computing tools. We show that few computational tools derive for each Riemannian metric can be used in practice as the basic atoms to build more complex generic algorithms such as interpolation, filtering and anisotropic diffusion on fields of geometric features. This computational framework is illustrated with the analysis of the shape of the scoliotic spine and the modeling of the brain variability from sulcal lines where the results suggest new anatomical findings

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom.

International audienceAs it provides the only method for mapping white matter fibers in vivo, diffusion MRI tractography is gaining importance in clinical and neuroscience research. However, despite the increasing availability of different diffusion models and tractography algorithms, it remains unclear how to select the optimal fiber reconstruction method, given certain imaging parameters. Consequently, it is of utmost importance to have a quantitative comparison of these models and algorithms and a deeper understanding of the corresponding strengths and weaknesses. In this work, we use a common dataset with known ground truth and a reproducible methodology to quantitatively evaluate the performance of various diffusion models and tractography algorithms. To examine a wide range of methods, the dataset, but not the ground truth, was released to the public for evaluation in a contest, the "Fiber Cup". 10 fiber reconstruction methods were evaluated. The results provide evidence that: 1. For high SNR datasets, diffusion models such as (fiber) orientation distribution functions correctly model the underlying fiber distribution and can be used in conjunction with streamline tractography, and 2. For medium or low SNR datasets, a prior on the spatial smoothness of either the diffusion model or the fibers is recommended for correct modelling of the fiber distribution and proper tractography results. The phantom dataset, the ground truth fibers, the evaluation methodology and the results obtained so far will remain publicly available on: http://www.lnao.fr/spip.php?rubrique79 to serve as a comparison basis for existing or new tractography methods. New results can be submitted to [email protected] and updates will be published on the webpage

Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry

International audienceWe present an extension of the diffeomorphic Geometric Demons algorithm which combines the iconic registration with geometric constraints. Our algorithm works in the log-domain space, so that one can efficiently compute the deformation field of the geometry. We represent the shape of objects of interest in the space of currents which is sensitive to both location and geometric structure of objects. Currents provides a distance between geometric structures that can be defined without specifying explicit point-to-point correspondences. We demonstrate this framework by registering simultaneously T1 images and 65 fiber bundles consistently extracted in 12 subjects and compare it against non-linear T1, tensor, and multi-modal T1+ Fractional Anisotropy (FA) registration algorithms. Results show the superiority of the Log-domain Geometric Demons over their purely iconic counterparts

Tunneling Violates Special Relativity

Experiments with evanescent modes and tunneling particles have shown that i) their signal velocity may be faster than light, ii) they are described by virtual particles, iii) they are nonlocal and act at a distance, iv) experimental tunneling data of phonons, photons, and electrons display a universal scattering time at the tunneling barrier front, and v) the properties of evanescent, i.e. tunneling modes is not compatible with the special theory of relativity

Mastite lobular granulomatosa: relato de caso

Trabalho de Conclusão de Curso - Universidade Federal de Santa Catarina. Curso de Medicina. Departamento de Tocoginecologia

Deterministic diffusion fiber tracking improved by quantitative anisotropy

Diffusion MRI tractography has emerged as a useful and popular tool for mapping connections between brain regions. In this study, we examined the performance of quantitative anisotropy (QA) in facilitating deterministic fiber tracking. Two phantom studies were conducted. The first phantom study examined the susceptibility of fractional anisotropy (FA), generalized factional anisotropy (GFA), and QA to various partial volume effects. The second phantom study examined the spatial resolution of the FA-aided, GFA-aided, and QA-aided tractographies. An in vivo study was conducted to track the arcuate fasciculus, and two neurosurgeons blind to the acquisition and analysis settings were invited to identify false tracks. The performance of QA in assisting fiber tracking was compared with FA, GFA, and anatomical information from T 1-weighted images. Our first phantom study showed that QA is less sensitive to the partial volume effects of crossing fibers and free water, suggesting that it is a robust index. The second phantom study showed that the QA-aided tractography has better resolution than the FA-aided and GFA-aided tractography. Our in vivo study further showed that the QA-aided tractography outperforms the FA-aided, GFA-aided, and anatomy-aided tractographies. In the shell scheme (HARDI), the FA-aided, GFA-aided, and anatomy-aided tractographies have 30.7%, 32.6%, and 24.45% of the false tracks, respectively, while the QA-aided tractography has 16.2%. In the grid scheme (DSI), the FA-aided, GFA-aided, and anatomy-aided tractographies have 12.3%, 9.0%, and 10.93% of the false tracks, respectively, while the QA-aided tractography has 4.43%. The QA-aided deterministic fiber tracking may assist fiber tracking studies and facilitate the advancement of human connectomics. © 2013 Yeh et al

Fast and Simple Computations on Tensors with Log-Euclidean Metrics.

Computations on tensors, i.e. symmetric positive definite real matrices in medical imaging, appear in many contexts. In medical imaging, these computations have become common with the use of DT-MRI. The classical Euclidean framework for tensor computing has many defects, which has recently led to the use of Riemannian metrics as an alternative. So far, only affine-invariant metrics had been proposed, which have excellent theoretical properites but lead to complex algorithms with a high computational cost. In this article, we present a new familly of metrics, called Log-Euclidean. These metrics have the same excellent theoretical properties as affine-invariant metrics and yield very similar results in practice. But they lead to much more simple computations, with a much lighter computational cost, very close to the cost of the classical Euclidean framework. Indeed, Riemannian computations become Euclidean computations in the logarithmic domain with Log-Euclidean metrics. We present in this article the complete theory for these metrics, and show experimental results for multilinear interpolation, dense extrapolation of tensors and anisotropic diffusion of tensor fields