Replication Data for: Individual housing of male C57BL/6J mice after weaning impairs growth and predisposes for obesity

All data was collected in microsoft excel. All data was processed in IBM SPSS statistics. All graphs were constructed in Graphpad Prism

Additional file 7 of Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome

Additional file 7: Supplementary Table 6. Association between yoghurt consumption and faecal metabolites. Results were obtained by fitting linear mixed effect model where metabolites were used as a response to level of yoghurt consumption and BMI, gender, age, HEI and family structure were used as covariates

Additional file 4 of Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome

Additional file 4: Supplementary Table 3. Association between yoghurt consumption and taxa (16S rRNA sequencing). Results were obtained by fitting linear mixed effect model where taxa were used as a response to level of yoghurt consumption and BMI, sex, age, HEI and family structure were used as covariates

Additional file 1 of Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome

Additional file 1: Supplementary Figure 1. Association between yoghurt consumption and B. animalis subsp. lactis . A. Scatter plot of the correlation between B. animalis subsp. lactis and B. animalis subsp. animalis. B. Boxplot picturing the association between frequency of yoghurt consumption and B. animalis subsp. lactis. C. Boxplot picturing the association between frequency of yoghurt consumption and B. animalis subsp. animalis. Results were obtained from linear regression (lme4 package in R) including family structure as random effect and age, BMI and sex as fixed effects

Additional file 8 of Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome

Additional file 8: Supplementary Table 7. Association between B. animalis subsp. lactis and faecal metabolites. Results were obtained by fitting linear mixed effect model where metabolites were used as a response to level of yoghurt consumption and BMI, gender, age, HEI and family structure were used as covariates. Only significant results (passing Bonferroni threshold

Additional file 6 of Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome

Additional file 6: Supplementary Table 5. Association between dairy fermented bacterial species (B. animalis subsp. lactis and S. thermophilus) and blood and phenotypical parameters associated with yoghurt consumption. Results were obtained by fitting linear mixed effect model where phenotypes and blood parameters were used as a response to species levels and BMI, sex, age, HEI and family structure were used as covariates