Making use of transcription factor enrichment to identify functional microRNA-regulons

microRNAs (miRNAs) are important modulators of messenger RNA stability and translation, controlling wide gene networks. Albeit generally modest on individual targets, the regulatory effect of miRNAs translates into meaningful pathway modulation through concurrent targeting of regulons with functional convergence. Identification of miRNA-regulons is therefore essential to understand the function of miRNAs and to help realise their therapeutic potential, but it remains challenging due to the large number of false positive target sites predicted per miRNA. In the current work, we investigated whether genes regulated by a given miRNA were under the transcriptional control of a predominant transcription factor (TF). Strikingly we found that for ~50% of the miRNAs analysed, their targets were significantly enriched in at least one common TF. We leveraged such miRNA-TF co-regulatory networks to identify pathways under miRNA control, and demonstrated that filtering predicted miRNA-target interactions (MTIs) relying on such pathways significantly enriched the proportion of predicted true MTIs. To our knowledge, this is the first description of an in- silico pipeline facilitating the identification of miRNA-regulons, to help understand miRNA function.Pacôme B. Prompsy, John Toubia, Linden J. Gearing, Randle L. Knight, Samuel C. Forster, Cameron P. Bracken, Michael P. Gantie

Hydrodynamic Transport Coefficients in Relativistic Scalar Field Theory

Hydrodynamic transport coefficients may be evaluated from first principles in a weakly coupled scalar field theory at arbitrary temperature. In a theory with cubic and quartic interactions, the infinite class of diagrams which contribute to the leading weak coupling behavior are identified and summed. The resulting expression may be reduced to a single linear integral equation, which is shown to be identical to the corresponding result obtained from a linearized Boltzmann equation describing effective thermal excitations with temperature dependent masses and scattering amplitudes. The effective Boltzmann equation is valid even at very high temperature where the thermal lifetime and mean free path are short compared to the Compton wavelength of the fundamental particles. Numerical results for the shear and the bulk viscosities are presented.Comment: 116 pages. An error in printing the figures file is corrected. The bulk viscosity sections are corrected and entirely rewritten. 38 figures in post-script format. One style file is include

Dermatite associada ao consumo de farelo de arroz desengordurado em bovinos

Dermatite tem sido observada em bovinos no Uruguai e no Rio Grande do Sul que são suplementados com farelo de arroz desengordurado em quantidade equivalente a 1% do peso corporal. Descreve-se um surto de dermatite associada ao consumo de farelo de arroz desengordurado em um município do interior do Rio Grande do Sul. Do total de 26 bovinos, com três anos de idade, sete apresentaram lesões que foram observadas após 24 dias de ingestão da ração de farelo de arroz desengordurado. As lesões eram observadas na extremidade distal dos membros posteriores e se caracterizavam por áreas de alopecia, com acentuado espessamento da epiderme, formando crostas secas, espessas e fissuradas. A lesão histológica observada nestes casos foi caracterizada como dermatite perivascular superficial crônica focalmente extensa moderada, com acantose irregular e formação de crosta serocelular. As lesões macro e microscópicas observadas, juntamente com os dados epidemiológicos, permitem concluir o diagnóstico de dermatite associada ao consumo de farelo de arroz desengordurado. As lesões histológicas, embora não patognomônicas, são descritas nesta doença

EuFe2_2As2_2 under high pressure: an antiferromagnetic bulk superconductor

We report the ac magnetic susceptibility $\chi_{ac}$ and resistivity $\rho$ measurements of EuFe$_2$As$_2$ under high pressure $P$. By observing nearly 100% superconducting shielding and zero resistivity at $P$ = 28 kbar, we establish that $P$-induced superconductivity occurs at $T_c \sim$~30 K in EuFe$_2$As$_2$. $\rho$ shows an anomalous nearly linear temperature dependence from room temperature down to $T_c$ at the same $P$. $\chi_{ac}$ indicates that an antiferromagnetic order of Eu$^{2+}$ moments with $T_N \sim$~20 K persists in the superconducting phase. The temperature dependence of the upper critical field is also determined.Comment: To appear in J. Phys. Soc. Jpn., Vol. 78 No.