Underwater Video Survey: Planning and Data Processing

The importance of underwater video surveys as an exploration tool has been steadily increasing over recent years [1]. Better photographic equipment, more effective sources of illumination, and improved processing techniques - all make video surveying a reliable tool for seafloor habitat mapping, sediment boundary delineation and groundtruthing, mapping and documentation of forensic and archaeological sites. There is a change in attitude towards video surveying that affects the way the data is collected, and hence its quality. Earlier video data processing algorithms had to cope with whatever was recorded (often simultaneously with acquisition of other data, considered to be more important). Now we have a chance to plan ahead and organize a survey in a way most suitable for the processing. The goal of this paper is to review available processing techniques and to discuss preferable survey patterns, associated errors and processing stability

Improvement of Image Alignment Using Camera Attitude Information

We discuss a proposed technique for incorporation of information from a variety of sensors in a video imagery processing pipeline. The auxiliary information allows one to simplify computations, effectively reducing the number of independent parameters in the transformation model. The mosaics produced by this technique are adequate for many applications, in particular habitat mapping. The algorithm, demonstrated through simulations and hardware configuration, is described in detai

Seafloor Segmentation Based on Bathymetric Measurements from Multibeam Echosounders Data

Bathymetric data depicts the geomorphology of the seabottom and allows characterization of spatial distributions of apparent benthic habitats. The variability of seafloor topography can be defined as a texture. This prompts for the application of well developed image processing techniques for automatic delineation of regions with clucially different physiographic characteristics. In the present paper histograms of biologically motivated invariant image attributes are used for characterization of local geomorphological feahires. This technique can be naturally applied in a range of spatial scales. Local feature vectors are then submitted to a procedure which divides the set into a number of clusters each representing a distinct type of the seafloor. Prior knowledge about benthic habitat locations allows the use of supervised classification, by training a Suppolt Vector Machine on a chosen data set, and then applying the developed model to a full set. The classification method is shown to perform well on the multibeam echosounder (MBES) data from Piscataqua River, New Hampshire, USA

Sensor-assisted Video Mapping of the Seafloor

In recent years video surveys have become an increasingly important ground-truthing of acousticseafloor characterization and benthic habitat mapping studies. However, the ground-truthing and detailed characterization provided by video are still typically done using sparse sample imagery supplemented by physical samples. Combining single video frames in a seamless mosaic can provide a tool by which imagery has significant areal coverage, while at the same time showing small fauna and biological features at mm resolution. The generation of such a mosaic is a challenging task due to height variations of the imaged terrain and decimeter scale knowledge of camera position. This paper discusses the current role of underwater video survey, and the potential for generating consistent, quantitative image maps using video data, accompanied by data that can be measured by auxiliary sensors with sufficient accuracy, such as camera tilt and heading, and their use in automated mosaicking techniques. The camera attitude data also provide the necessary information to support the development of a video collage. The collage provides a quick look at the large spatial scale features in a scene and can be used to pinpoint regions that are likely to yield useful information when rendered into high-resolution mosaics. It is proposed that high quality mosaics can be produced using consumer-grade cameras and low-cost sensors, thereby allowing for the economical scientific video surveys. A case study is presented with the results from benthic habitat mapping and the ground-truthing ofseafloor acoustic data using both real underwater imagery and simulations. A computer modeling of the process of video data acquisition (in particular on a non-flat terrain) allows for a better understanding of the main sources of error in mosaic generation and for the choice of near-optimal processing strategies. Various spatial patterns of video survey coverage are compared and it is shown that some patterns have certain advantages in the sense of accumulated error and overall mosaic accuracy

Sensor-Assisted Video Mosaicing for Seafloor Mapping

This paper discusses a proposed processing technique for combining video imagery with auxiliary sensor information. The latter greatly simplifies image processing by reducing complexity of the transformation model. The mosaics produced by this technique are adequate for many applications, in particular habitat mapping. The algorithm is demonstrated through simulations and hardware configuration is described

Seafloor Video Mapping: Modeling, Algorithms, Apparatus

This paper discusses a technique used for construction of high-resolution image mosaic from a videosequence and the synchronously logged camera attitude information. It allows one to infer geometric characteristics of the imaged terrain and hence improve the mosaic quality and reduce the computational burden. The technique is demonstrated using numerical modeling and is applied to videodata collected on Rainsford Island, Mass. Calculation of the transformation relating consecutive image frames is an essential operation affecting reliability of the whole mosaicing process. Improvements to the algorithm are suggested, which significantly decrease the possibility of convergence to an inappropriate solution

Reading sentences of uniform word length II: very rapid adaptation of the preferred saccade length

In the current study we investigated whether readers adjust their preferred saccade length (PSL) during reading on a trial-by-trial basis. The PSL refers to the distance between a saccade launch site and saccade target (i.e., the word center during reading) when participants neither undershoot nor overshoot this target (McConkie, Kerr, Reddix, & Zola, 1988). The tendency for saccades longer or shorter than the PSL to under or overshoot their target is referred to as the range error. Recent research by Cutter, Drieghe, and Liversedge (2017) has shown that the PSL changes to be shorter when readers are presented with thirty consecutive sentences exclusively made of three letter words, and longer when presented with thirty consecutive sentences exclusively made of five letter words. We replicated and extended this work by this time presenting participants with these uniform sentences in an unblocked design. We found that adaptation still occurred across different sentence types despite participants only having one trial to adapt. Our analyses suggested that this effect was driven by the length of the words readers were making saccades away from, rather than the length of the words in the rest of the sentence. We propose an account of the range error in which readers use parafoveal word length information to estimate the length of a saccade between the centre of two parafoveal words (termed the Centre-Based Saccade Length) prior to landing on the first of these words

Divergent responses of Atlantic coastal and oceanic Synechococcus to iron limitation

Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 112 (2015): 9944-9949, doi:10.1073/pnas.1509448112.Marine Synechococcus are some of the most diverse and ubiquitous phytoplankton, and iron (Fe) is an essential micronutrient that limits productivity in many parts of the ocean. To investigate how coastal and oceanic Atlantic Synechococcus strains acclimate to Fe availability, we compared the growth, photophysiology, and quantitative proteomics of two Synechococcus strains from different Fe regimes. Synechococcus strain WH8102, from a region in the southern Sargasso Sea that receives substantial dust deposition, showed impaired growth and photophysiology as Fe declined, yet utilized few acclimation responses. Coastal WH8020, from the dynamic, seasonally variable New England shelf, displayed a multi-tiered, hierarchical cascade of acclimation responses with different Fe thresholds. The multi-tiered response included changes in Fe acquisition, storage, and photosynthetic proteins, substitution of flavodoxin for ferredoxin, and modified photophysiology, all while maintaining remarkably stable growth rates over a range of Fe concentrations. Modulation of two distinct ferric uptake regulator (Fur) proteins that coincided with the multi-tiered proteome response was found, implying the coastal strain has different regulatory threshold responses to low Fe availability. Low nitrogen (N) and phosphorus (P) availability in the open ocean may favor the loss of Fe response genes when Fe availability is consistent over time, whereas these genes are retained in dynamic environments where Fe availability fluctuates and N and P are more abundant.This work was supported by a National Science Foundation Postdoctoral Research Fellowship in Biology to K.R.M.M. (NSF 1103575), National Science Foundation Oceanography grants OCE-1220484, OCE-0928414, OCE-1233261, OCE- 1155566, OCE-1131387, and OCE-0926092, as well as Gordon and Betty Moore Foundation grants 3782 and 3934

Trust, morality and altruism in the donation of biological material : the case of Portugal

This paper examines a number of social, ethical and cultural issues related to the application of biotechnology. The focus of the paper relies on two different cases of governing biotechnology in Portugal, referring to donation of biological material: the act of donation of eggs and sperm; and volunteers for donation of DNA material for the forensic national DNA database. We analyze the discourses on donation of biological material framing them in rhetorical devices of gift, altruism, informed consent and social responsibility. This comes blended with still unclear and emergent regulation and policies of access, retention, preservation and governing of biological material and of donors’ identification. The risks are mitigated by narratives of science and technology as social progress and providers of public good and health benefits, as well as by underlining the individual responsibility in this domain and by reinforcing the rhetoric of gene quality, based on socio-cultural and bio-genetic criteria