Environmental and cultural reflections in Kanuri hunters' songs

Our dichotomy of ‘nature’ and ‘culture’ is expressed in the Kanuri language with the terms al@ga for ‘creation’ and ‘creature’ which embraces trees, mammals, birds, insects, humans, in short the whole of the natural environment, and ada for ‘custom, habit, way of behaviour, family tradition’ for culture as a whole. There is no genre of oral literature, which would describe al@ga as such, but aspects of it can always be expressed in proverbs, riddles, toponymic praise phrases and songs, of which those performed by the hunters figure most prominently in reflecting upon al@ga. Yet, in these songs (and partly in other genres) ideas about al@ga are not purely descriptive in naturalists’ terms. They are much rather expressions, which centrally combine notions of the social and natural environment

Modelling the effect of vertical mixing on bottle incubations for determining in situ phytoplankton dynamics. II. Primary production

The estimation of in situ phytoplankton primary production is pivotal to many questions in biological oceanography and marine ecology both in a local and global context. Applications range from earth system modelling, the characterisation of aquatic ecosystem dynamics, or the local management of water quality. A common approach for estimating in situ primary production is to incubate natural phytoplankton assemblages in clear bottles at a range of fixed depths and to measure the uptake of carbon (14C) during the incubation period (typically 24 h). One of the main concerns with using fixed-depth bottle incubations is whether stranding samples at fixed depths biases the measured CO2 fixation relative to the 'true' in situ mixed conditions. Here we employ an individual based turbulence and photosynthesis model, which also accounts for photoacclimation and -inhibition, to examine whether the in vitro productivity estimates obtained from fixed-depth incubations are representative of the in situ productivity in a freely mixing water column. While previous work suggested that in vitro estimates could either over- or underestimate the in situ productivity, we show that the errors due to arresting the incubation bottles at fixed depths are indeed minimal. We present possible explanations for how previous authors could have arrived at contradictory results and discuss whether they might be artefacts related to the particular sampling protocol used. We discuss the errors associated with chlorophyll-based incubation methods for determining in situ phytoplankton growth rates in Ross et al. (2011; Mar Ecol Prog Ser 435:13-31). © Inter-Research 2011

Modelling the effect of vertical mixing on bottle incubations for determining in situ phytoplankton dynamics. I. Growth rates

Reliable estimates of in situ phytoplankton growth rates are central to understanding the dynamics of aquatic ecosystems. A common approach for estimating in situ growth rates is to incubate natural phytoplankton assemblages in clear bottles at fixed depths or irradiance levels and measure the change in chlorophyll a (Chl) over the incubation period (typically 24 h). Using a modelling approach, we investigate the accuracy of these Chl-based methods focussing on 2 aspects: (1) in a freely mixing surface layer, the cells are typically not in balanced growth, and with photoacclimation, changes in Chl may yield different growth rates than changes in carbon; and (2) the in vitro methods neglect any vertical movement due to turbulence and its effect on the cells' light history. The growth rates thus strongly depend on the incubation depth and are not necessarily representative of the depth-integrated in situ growth rate in the freely mixing surface layer. We employ an individual based turbulence and photosynthesis model, which also accounts for photoacclimation and photo - inhibition, to show that the in vitro Chl-based growth rate can differ both from its carbon-based in vitro equivalent and from the in situ value by up to 100%, depending on turbulence intensity, optical depth of the mixing layer, and incubation depth within the layer. We make recommendations for choosing the best depth for single-depth incubations. Furthermore we demonstrate that, if incubation bottles are being oscillated up and down through the water column, these systematic errors can be significantly reduced. In the present study, we focus on Chl-based methods only, while productivity measurements using carbon-based techniques (e.g. 14C) are discussed in Ross et al. (2011; Mar Ecol Prog Ser 435:33-45). © Inter-Research 2011

Treatment of Barrett's Esophagus by radiofrequency ablation: a monocentrical study

Background and aims: Barrett's esophagus (BE) is a frequent disease. Therapy by radiofrequency ablation (RFA) has been shown in literature to be an effective eradication therapy of BE, with a reasonable frequency of complications. The aim of our study is to compare the efficacy and complications of the treatment of BE by RFA in our center to those of literature, as a quality control. Methods: We collected the data of patients who underwent RFA treatment of BE between January 1st 2011 and July 31st 2015. This included 32 patients, 20 of which completed the therapy by the end of the study period. The data was taken from histological and endoscopical medical reports as well as clinical follow-up reports for certain patients. The primary outcome was the efficacy of treatment, including whether there was a complete eradication of intestinal metaplasia (CE-IM) or of dysplasia (CE-D). The secondary outcome was to assess any post-RFA complications. These included progression to adenocarcinoma under treatment, upper gastro-intestinal (GI) hemorrhage, stenosis and pain. We compared our results to those of literature. Results: CE-D was achieved in 93.8% of the patients, whereas CE-IM was achieved in 61.1% of the patients. However, there were 11.11% of the patients who only had microislets of residual metaplasia. In a meta-analysis from Orman and al, CE-D was achieved in 91% of patients and CE-IM in 78% of patients. In our cohort, one patient progressed to adenocarcinoma, 4 patients had upper-GI hemorrhage and 2 patients had esophageal stenosis. Of the 17 patients who benefitted from a systematic clinical follow-up, 2 patients had fever after the RFA session and 10 described pain (odynodysphagia, epigastralgia or retrosternal pain). These complications were all previously described in literature. Conclusion: The efficacy of radiofrequency ablative therapy of Barrett's esophagus in the University hospital of Lausanne is comparable to that described in literature in terms of CE-D, but not in terms of CE-IM. The post-RFA complications were qualitatively comparable to those of literature

Modeled Chl:C ratio and derived estimates of phytoplankton carbon biomass and its contribution to total particulate organic carbon in the global surface ocean

Chlorophyll (Chl) is a distinctive component of autotrophic organisms, often used as an indicator of phytoplankton biomass in the ocean. However, assessment of phytoplankton biomass from Chl relies on the accurate estimation of the Chl:carbon(C) ratio. Here we present global patterns of Chl:C ratios in the surface ocean obtained from a phytoplankton growth model that accounts for the optimal acclimation of phytoplankton to ambient nutrient, light, and temperature conditions. The model agrees largely with observed/expected global patterns of Chl:C. Combining our Chl:C estimates with satellite Chl and particulate organic carbon (POC), we infer phytoplankton C concentration in the surface ocean and its contribution to the total POC pool. Our results suggest that the portion of POC corresponding to living phytoplankton is higher in subtropical latitudes and less productive regions (∼30–70%) and decreases to ∼10–30% toward high latitudes and productive regions. An important caveat of our model is the lack of iron limiting effects on phytoplankton physiology. Comparison of our predicted phytoplankton biomass with an independent estimate of total POC reveals a positive correlation between nitrate concentrations and nonphotosynthetic POC in the surface ocean. This correlation disappears when a constant Chl:C is applied. Our analysis is not constrained by assumptions of constant Chl:C or phytoplankton:POC ratio, providing a novel independent analysis of phytoplankton biomass in the surface ocean. These results highlight the importance of accounting for the variability in Chl:C and its application in distinguishing the autotrophic and heterotrophic components in the assemblage of the marine plankton ecosystem

Flexible C : N ratio enhances metabolism of large phytoplankton when resource supply is intermittent

Abstract. Phytoplankton cell size influences particle sinking rate, food web interactions and biogeographical distributions. We present a model in which the uptake, storage and assimilation of nitrogen and carbon are explicitly resolved in different-sized phytoplankton cells. In the model, metabolism and cellular C : N ratio are influenced by the accumulation of carbon polymers such as carbohydrate and lipid, which is greatest when cells are nutrient starved, or exposed to high light. Allometric relations and empirical data sets are used to constrain the range of possible C : N, and indicate that larger cells can accumulate significantly more carbon storage compounds than smaller cells. When forced with extended periods of darkness combined with brief exposure to saturating irradiance, the model predicts organisms large enough to accumulate significant carbon reserves may on average synthesize protein and other functional apparatus up to five times faster than smaller organisms. The advantage of storage in terms of average daily protein synthesis rate is greatest when modeled organisms were previously nutrient starved, and carbon storage reservoirs saturated. Small organisms may therefore be at a disadvantage in terms of average daily growth rate in environments that involve prolonged periods of darkness and intermittent nutrient limitation. We suggest this mechanism is a significant constraint on phytoplankton C : N variability and cell size distribution in different oceanic regimes. </jats:p

The physiological cost of diazotrophy for Trichodesmium erythraeum IMS101

Trichodesmium plays a significant role in the oligotrophic oceans, fixing nitrogen in an area corresponding to half of the Earth’s surface, representing up to 50% of new production in some oligotrophic tropical and subtropical oceans. Whilst Trichodesmium blooms at the surface exhibit a strong dependence on diazotrophy, colonies at depth or at the surface after a mixing event could be utilising additional N-sources. We conducted experiments to establish how acclimation to varying N-sources affects the growth, elemental composition, light absorption coefficient, N2 fixation, PSII electron transport rate and the relationship between net and gross photosynthetic O2 exchange in T. erythraeum IMS101. To do this, cultures were acclimated to growth medium containing NH4+ and NO3- (replete concentrations) or N2 only (diazotrophic control). The light dependencies of O2 evolution and O2 uptake were measured using membrane inlet mass spectrometry (MIMS), while PSII electron transport rates were measured from fluorescence light curves (FLCs). We found that at a saturating light intensity, Trichodesmium growth was ~ 10% and 13% lower when grown on N2 than with NH4+ and NO3-, respectively. Oxygen uptake increased linearly with net photosynthesis across all light intensities ranging from darkness to 1100 μmol photons m-2 s-1. The maximum rates and initial slopes of light response curves for C-specific gross and net photosynthesis and the slope of the relationship between gross and net photosynthesis increased significantly under non-diazotrophic conditions. We attribute these observations to a reduced expenditure of reductant and ATP for nitrogenase activity under non-diazotrophic conditions which allows NADPH and ATP to be re-directed to CO2 fixation and/or biosynthesis. The energy and reductant conserved through utilising additional N-sources could enhance Trichodesmium’s productivity and growth and have major implications for its role in ocean C and N cycles

An integrated response of Trichodesmium erythraeum IMS101 growth and photo-physiology to Iron, CO₂, and light intensity

We have assessed how varying CO 2 (180, 380, and 720 μatm) and growth light intensity (40 and 400 μmol photons m -2 s -1 ) affected Trichodesmium erythraeum IMS101 growth and photophysiology over free iron (Fe') concentrations between 20 and 9,600 pM. We found significant iron dependencies of growth rate and the initial slope and maximal relative PSII electron transport rates (rP m ). Under iron-limiting concentrations, high-light increased growth rates and rPm; possibly indicating a lower allocation of resources to iron-containing photosynthetic proteins. Higher CO 2 increased growth rates across all iron concentrations, enabled growth to occur at lower Fe' concentrations, increased rPm and lowered the iron half saturation constants for growth (K m ). We attribute these CO 2 responses to the operation of the CCM and the ATP spent/saved for CO 2 uptake and transport at low and high CO 2 , respectively. It seems reasonable to conclude that T. erythraeum IMS101 can exhibit a high degree of phenotypic plasticity in response to CO 2 , light intensity and iron-limitation. These results are important given predictions of increased dissolved CO 2 and water column stratification (i.e., higher light exposures) over the coming decades

The physiological response of seven strains of picophytoplankton to light, and its representation in a dynamic photosynthesis model

Picophytoplankton dominate the phytoplankton community in wide ocean areas and are considered efficient in the acquisition of light compared to other phytoplankton groups. To quantify their photophysiological parameters we use 3 strains of picoprokaryotes and 4 strains of picoeukaryotes. We measure the acclimated response of the exponential growth rates and chlorophyll a to carbon ratios, as well as the instantaneous response of photosynthesis rates at 5-7 light intensities. We then use a dynamic photosynthesis model (Geider, MacIntyre, and Kana 1997) and extend it with a photoinhibition term. We derive five photophysiological parameters: the maximum rate of photosynthesis (PCm), the affinity to light (αchl), the photoinhibition term (βchl), the respiration rate (resp), and the maximum chlorophyll a to carbon ratio (θmax). We show that PCm is significantly lower for picoprokaryotes than for picoeukaryotes and increases significantly with increasing cell size. In turn, αchl decreases significantly with increasing maximum growth rate (µmax). The latter finding is contrary to a previously reported relationship for phytoplankton, but agrees with theoretical assumptions based on size. The higher efficiency in light acquisition gives picoprokaryotes an advantage in light limited environments at the expense of their maximum growth rate. In addition, our results indicate that the accumulation of long-term damage through photoinhibition during acclimation is not well represented by the dynamic photosynthesis model. Hence, we would recommend to distinguish between the effects of irreversible damage (on a time scale of days) on growth rates and of reversible damage (on a time scale of minutes) on photosynthesis rates

Limitation of dimethylsulfoniopropionate synthesis at high irradiance in natural phytoplankton communities of the Tropical Atlantic

Predictions of the ocean-atmosphere flux of dimethyl sulfide will be improved by understanding what controls seasonal and regional variations in dimethylsulfoniopropionate (DMSP) production. To investigate the influence of high levels of irradiance including ultraviolet radiation (UVR), on DMSP synthesis rates (μDMSP) and inorganic carbon fixation (μPOC) by natural phytoplankton communities, nine experiments were carried out at different locations in the low nutrient, high light environment of the northeastern Tropical Atlantic. Rates of μDMSP and μPOC were determined by measuring the incorporation of inorganic 13C into DMSP and particulate organic carbon. Based on measurements over discrete time intervals during the day, a unique μDMSP vs. irradiance (P vs. E) relationship was established. Comparison is made with the P vs. E relationship for μPOC, indicating that light saturation of μDMSP occurs at similar irradiance to μPOC and is closely coupled to carbon fixation on a diel basis. Photoinhibition during the middle of the day was exacerbated by exposure to UVR, causing an additional 55–60% inhibition of both μDMSP and μPOC at the highest light levels. In addition, decreased production of DMSP in response to UVR-induced photoxidative stress, contrasted with the increased net synthesis of photoprotective xanthophyll pigments. Together these results indicate that DMSP production by phytoplankton in the tropical ocean is not regulated in the short term by the necessity to control increasing photooxidative stress as irradiance increases during the day. The study provides new insight into the regulation of resource allocation into this biogeochemically important, multi-functional compatible solute