A comparative study of the function of heterospecific vocal mimicry in European passerines

Although heterospecific vocal imitation is well documented in passerines, the evolutionary correlates of this phenomenon are poorly known. Here, we studied interspecific variation in vocal mimicry in a comparative study of 241 European songbirds. We tested whether vocal mimicry is a mode of repertoire acquisition or whether it resulted from imperfect song learning. We also investigated the effect of the degree of contact with the vocal environment (with species having larger ranges, abundance, or being long lived having a higher degree of mimicry) and a possible link with cognitive capacity (an overall larger brain in species with mimicry). Finally, we determined the potential evolutionary role of vocal mimicry in different interspecific contexts, predicting that mimicry may affect the intensity of brood parasitism, predation, or degree of hybridization. While controlling for research effort and phylogenetic relationships among taxa, we found that effect sizes for intersong interval, brain size, breeding dispersal, abundance, age-dependent expression of repertoires, and predation risk reached a level that may indicate evolutionary importance. Vocal mimicry seems to be a consequence of song continuity rather than song complexity, may partially have some cognitive component but may also be dependent on the vocal environment, and may attract the attention of predators. However, estimates of sexual selection and interspecific contacts due to brood parasitism and hybridization varied independently of vocal mimicry. Therefore, mimicry may have no function in female choice for complex songs and may be weakly selected via interspecific associations. These findings provide little evidence for vocal mimicry having evolved to serve important functions in most birds

Fuel bioethanol production from whey permeate

The objective of this thesis was to evaluate the feasibility for the production of fuel bioethanol from whey permeate. The identification of the limiting factors of the process revealed that the stabilization of the substrate was critical to the use of whey as a fermentation substrate and that the conversion yields and ethanol tolerance limited the process. A comparison of the possible scenarios for the production of bioethanol from whey was first performed. It was demonstrated that fresh whey should be concentrated at the production site before being transported to a centralized treatment plant, since transporting dilute material or producing ethanol at the dairy would result in too high operating costs. An economic comparison of a treatment plant, which (i) "directly" ferments lactose into ethanol using Kluyveromyces fragilis and (ii) "indirectly" ferments hydrolyzed whey using Saccharomyces cerevisiae, resulted in similar production costs of 1.35 CHF/LEtOH and 1.32 CHF/LEtOH respectively. Whey stabilization was investigated by testing the addition of chemical compounds to whey. These were evaluated according to their ability to prevent the growth of lactic acid bacteria which were identified as being mainly responsible for whey instability. Formic acid (50 mM) or hydrogen peroxide (100 mM) were shown to extend the stability from 2-3 days, at 4°C to 21 days at ambient temperature. However, such concentrations of preservative also inhibit the growth of yeasts, therefore they must be removed prior to fermentation. Of the compounds tested, formic acid was preferred due to the high level of bacterial growth inhibition at pH 4, and its non-toxicity for yeast at neutral pH. This would enable whey to be stored at room temperature for a three-week period without negatively influencing the subsequent yeast fermentation. Global productivity of the initial fermentation cultures was considerably reduced as a result of a long non-productive lag phase. In order to improve the understanding of the principle factors which, not only influence the duration of the lag phase, but also the biomass produced during a pre-culture period of 24h and the maximum growth rate in fermentation cultures, six pre-culture parameters were tested alone or in combination on two ethanol-producing yeasts, K. marxianus CBS 5795 and CBS 397, using whey permeate as substrate through the application of design of experiment procedures. The key parameters identified through this strategy were: influence of temperature, type of sugar, culture mode, initial biomass concentration and initial sugar concentration. Optimum ethanol productivity was achieved by cultivating the pre-culture anaerobically on medium containing lactose, which resulted in an improvement of the productivity by 10-11% compared to an aerobic pre-culture with glucose. The principal organism studied for ethanol fermentation from whey permeate was K. fragilis due to its ability to directly ferment lactose. However, such direct fermentation yeasts generally suffer from low conversion yields and poor tolerance to ethanol (2-3% v/v). An alternative is to utilize indirect fermentation yeasts, such as S. cerevisiae, which show considerably better ethanol fermentation performance but has the disadvantage that an expensive enzymatic hydrolysis step is required prior to fermentation. In this study both types of process have been characterized involving eight ethanol producing yeasts. The culture conditions were optimized for each strain using a design of experiment methodology. Highest conversion yield and alcohol tolerance were achieved with S. cerevisiae Ethanol Red (YP/S= 0.662 C-mol/C-mol, cEtOHmax= 148 g/L), of the indirect fermentation yeasts, and with K. marxianus CBS 5795 (YP/S= 0.660 C-mol/C-mol, cEtOHmax= 79 g/L) of the direct fermentation yeasts studied. Introducing the data obtained from cultures with these yeasts to former economic evaluations of both scenarios, showed that direct fermentation should be preferred for fermenting whey permeate to ethanol. A maximum volumetric productivity of 6.24 g/(L·h) at 37°C and pH 4 was achieved with K. marxianus CBS 5795. Fermentation of non-sterile whey permeate with a consortium (CEKI) of K. marxianus (S1), I. orientalis (S2) and E. faecalis (S3), isolated from spontaneous cultures, was then studied. Maximal ethanol yield of 0.65 C-mol/C-mol, as highest ethanol concentration of 55 g/L, was achieved with CEKI, at 37°C and pH 4, compared to isolated cultures of these organisms. The results also suggest that E. faecalis exhibits a protective effect against lactic acid bacteria. Specific productivity of CEKI was 0.21 gEtOH/(gbiomass·h). Finally, a novel in-situ product recovery method, based on capsular perstraction with an organic solvent, was developed for ethanol extraction in batch fermentation systems using CEKI, which utilizes microcapsules. The production of capsules of 2 mm diameter that contained a hydrophobic core of laurinaldehyde and an alginate-based membrane enabled (i) to reduce the toxicity of the solvent for the growing cultures, and (ii) make the separation of the organic phase easier for a subsequent ethanol recovery. For the produced capsules mass transfer was determined by the solvent layer (0.27·10-5 cm2/s), which resulted in a maximum specific ethanol recovery of 3.17 gEtOH/(gsolvent·s)

Sistema de busca semântica para o SCALA

O artigo apresenta uma proposta para aprimorar no SCALA a procura por imagens, com a inserção de busca semântica e categorização de imagens. Para a tarefa de desenvolvimento de uma ferramenta que atue na busca automática de imagens pelo sistema é necessário uma retomada dos requisitos e modelagem do sistema, pesquisa sobre usos da semântica e pragmática em processos de busca. O trabalho apresenta um estudo inicial para a construção de uma ferramenta de busca semântica no banco de imagens do sistema SCALA a partir da definição de um conjunto de metadados e a construção de uma ontologia do domínio específico

Sodium-hydrogen exchanger 6 (NHE6) deficiency leads to hearing loss, via reduced endosomal signalling through the BDNF/Trk pathway.

Acid-base homeostasis is critical for normal growth, development, and hearing function. The sodium-hydrogen exchanger 6 (NHE6), a protein mainly expressed in early and recycling endosomes, plays an important role in regulating organellar pH. Mutations in NHE6 cause complex, slowly progressive neurodegeneration. Little is known about NHE6 function in the mouse cochlea. Here, we found that all NHE isoforms were expressed in wild-type (WT) mouse cochlea. Nhe6 knockout (KO) mice showed significant hearing loss compared to WT littermates. Immunohistochemistry in WT mouse cochlea showed that Nhe6 was localized in the organ of Corti (OC), spiral ganglion (SG), stria vascularis (SV), and afferent nerve fibres. The middle and the inner ears of WT and Nhe6 KO mice were not different morphologically. Given the putative role of NHE6 in early endosomal function, we examined Rab GTPase expression in early and late endosomes. We found no change in Rab5, significantly lower Rab7, and higher Rab11 levels in the Nhe6 KO OC, compared to WT littermates. Because Rabs mediate TrkB endosomal signalling, we evaluated TrkB phosphorylation in the OCs of both strains. Nhe6 KO mice showed significant reductions in TrkB and Akt phosphorylation in the OC. In addition, we examined genes used as markers of SG type I (Slc17a7, Calb1, Pou4f1, Cal2) and type II neurons (Prph, Plk5, Cacna1g). We found that all marker gene expression levels were significantly elevated in the SG of Nhe6 KO mice, compared to WT littermates. Anti-neurofilament factor staining showed axon loss in the cochlear nerves of Nhe6 KO mice compared to WT mice. These findings indicated that BDNF/TrkB signalling was disrupted in the OC of Nhe6 KO mice, probably due to TrkB reduction, caused by over acidification in the absence of NHE6. Thus, our findings demonstrated that NHEs play important roles in normal hearing in the mammalian cochlea

Genetic admixture despite ecological segregation in a North African sparrow hybrid zone (Aves, Passeriformes, Passer domesticus × Passer hispaniolensis)

Under different environmental conditions, hybridization between the same species might result in different patterns of genetic admixture. Particularly, species pairs with large distribution ranges and long evolutionary history may have experienced several independent hybridization events over time in different zones of overlap. In birds, the diverse hybrid populations of the house sparrow (Passer domesticus) and the Spanish sparrow (Passer hispaniolensis) provide a striking example. Throughout their range of sympatry, these two species do not regularly interbreed; however, a stabilized hybrid form (Passer italiae) exists on the Italian Peninsula and on several Mediterranean is‐ lands. The spatial distribution pattern on the Eurasian continent strongly contrasts the situation in North Africa, where house sparrows and Spanish sparrows occur in close vicinity of phenotypically intermediate populations across a broad mosaic hy‐ brid zone. In this study, we investigate patterns of divergence and admixture among the two parental species, stabilized and nonstabilized hybrid populations in Italy and Algeria based on a mitochondrial marker, a sex chromosomal marker, and 12 micros‐ atellite loci. In Algeria, despite strong spatial and temporal separation of urban early‐ breeding house sparrows and hybrids and rural late‐breeding Spanish sparrows, we found strong genetic admixture of mitochondrial and nuclear markers across all study populations and phenotypes. That pattern of admixture in the North African hybrid zone is strikingly different from i) the Iberian area of sympatry where we observed only weak asymmetrical introgression of Spanish sparrow nuclear alleles into local house sparrow populations and ii) the very homogenous Italian sparrow population where the mitogenome of one parent (P. domesticus) and the Z‐chromosomal marker of the other parent (P. hispaniolensis) are fixed. The North African sparrow hybrids provide a further example of enhanced hybridization along with recent urbanization and anthropogenic land‐use changes in a mosaic landscape.Fil: Päckert, Martin. Leibniz Institution for Biodiversity and Earth System Research, Dresden; AlemaniaFil: Ait Belkacem, Abdelkrim. Université de Djelfa; ArgeliaFil: Wolfgramm, Hannes. Leibniz Institution for Biodiversity and Earth System Research, Dresden; AlemaniaFil: Gast, Oliver. Institute of Vertebrate Biology Brno y Masaryk University ; República ChecaFil: Canal Piña, David. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Ciencias de la Tierra y Ambientales de La Pampa. Universidad Nacional de La Pampa. Facultad de Ciencias Exactas y Naturales. Instituto de Ciencias de la Tierra y Ambientales de La Pampa; ArgentinaFil: Giacalone, Gabriele. Cooperativa Silene; ItaliaFil: Lo Valvo, Mario. Universita Degli Studi Di Palermo.; ItaliaFil: Vamberger, Melita. Leibniz Institution for Biodiversity and Earth System Research, Dresden; AlemaniaFil: Wink, Michael. Ruprecht Karls Universitat Heidelberg.; AlemaniaFil: Martens, Jochen. Johannes Gutenberg Universitat Mainz; AlemaniaFil: Stuckas, Heiko. Leibniz Institution for Biodiversity and Earth System Research, Dresden; Alemani

Life-history innovation to climate change:Can single-brooded migrant birds become multiple breeders?

When climatic conditions change and become outside the range experienced in the past, species may show life-history innovations allowing them to adapt in new ways. We report such an innovation for pied flycatchers Ficedula hypoleuca. Decades of breeding biological studies on pied flycatchers have rarely reported multiple breeding in this long-distance migrant. In two populations, we found 12 recent incidents of females with second broods, all produced by extremely early laying females in warm springs. As such early first broods are a recent phenomenon, because laying dates have gradually advanced over time, this innovation now allows individual females to enhance their reproductive success considerably. If laying dates continue advancing, potentially more females may become multiple breeders and selection for early (and multiple) breeding phenotypes increases, which may accelerate adaptation to climatic change

Association of statin use and lipid levels with cerebral microbleeds and intracranial hemorrhage in patients with atrial fibrillation: A prospective cohort study

Background: An increased risk of intracranial hemorrhage (ICH) associated with statins has been reported, but data on the relationship between statin use and cerebral microbleeds (CMBs) in patients with atrial fibrillation (AF), a population at high bleeding and cardiovascular risk, are lacking. Aims: To explore the association between statin use and blood lipid levels with the prevalence and progression of CMBs in patients with AF with a particular focus on anticoagulated patients. Methods: Data of Swiss-AF, a prospective cohort of patients with established AF, were analyzed. Statin use was assessed during baseline and throughout follow-up. Lipid values were measured at baseline. CMBs were assessed using magnetic resonance imagining (MRI) at baseline and at 2 years follow-up. Imaging data were centrally assessed by blinded investigators. Associations of statin use and low-density lipoprotein (LDL) levels with CMB prevalence at baseline or CMB progression (at least one additional or new CMB on follow-up MRI at 2 years compared with baseline) were assessed using logistic regression models; the association with ICH was assessed using flexible parametric survival models. Models were adjusted for hypertension, smoking, body mass index, diabetes, stroke/transient ischemic attack, coronary heart disease, antiplatelet use, anticoagulant use, and education. Results: Of the 1693 patients with CMB data at baseline MRI (mean ± SD age 72.5 ± 8.4 years, 27.6% women, 90.1% on oral anticoagulants), 802 patients (47.4%) were statin users. The multivariable adjusted odds ratio (adjOR) for CMBs prevalence at baseline for statin users was 1.10 (95% CI = 0.83–1.45). AdjOR for 1 unit increase in LDL levels was 0.95 (95% CI = 0.82–1.10). At 2 years, 1188 patients had follow-up MRI. CMBs progression was observed in 44 (8.0%) statin users and 47 (7.4%) non-statin users. Of these patients, 64 (70.3%) developed a single new CMB, 14 (15.4%) developed 2 CMBs, and 13 developed more than 3 CMBs. The multivariable adjOR for statin users was 1.09 (95% CI = 0.66–1.80). There was no association between LDL levels and CMB progression (adjOR 1.02, 95% CI = 0.79–1.32). At follow-up 14 (1.2%) statin users had ICH versus 16 (1.3%) non-users. The age and sex adjusted hazard ratio (adjHR) was 0.75 (95% CI = 0.36–1.55). The results remained robust in sensitivity analyses excluding participants without anticoagulants. Conclusions: In this prospective cohort of patients with AF, a population at increased hemorrhagic risk due to anticoagulation, the use of statins was not associated with an increased risk of CMBs

Association of Statin Use and Lipid Levels with Cerebral Microbleeds and Intracranial Hemorrhage in Patients with Atrial Fibrillation: a Prospective Cohort Study.

BACKGROUND An increased risk of intracranial hemorrhage (ICH) associated with statins has been reported; but data on the relationship between statin-use and cerebral microbleeds (CMBs) in patients with atrial fibrillation (AF), a population at high bleeding and cardiovascular risk are lacking. AIMS To explore the association between statin-use and blood lipid-levels with the prevalence and progression of CMBs in patients with atrial fibrillation with particular focus on anticoagulated patients. METHODS Data of Swiss-AF, a prospective cohort of patients with established AF were analyzed. Statin-use was assessed during baseline and throughout follow-up. Lipid values were measured at baseline. CMBs were assessed using magnetic resonance imagining (MRI) at baseline and at 2-years follow-up. Imaging data were centrally assessed by blinded investigators. Associations of statin-use and low-density lipoprotein (LDL) levels with CMB prevalence at baseline or CMB progression (at least one additional or new CMB on follow-up MRI at 2-years compared to baseline) were assessed using logistic regression models; the association with ICH was assessed using flexible parametric survival models. Models were adjusted for hypertension, smoking, body mass index, diabetes, stroke/transient ischemic attack, coronary heart disease, antiplatelet use, anticoagulant use and education. RESULTS Of the 1693 patients with CMB data at baseline MRI (mean±SD age 72.5±8.4y, 27.6% women, 90.1% on oral anticoagulants), 802 patients (47.4%) were statin users. The multivariable adjusted odds ratio (adjOR) for CMBs prevalence at baseline for statin users was 1.10 (95% CI, 0.83-1.45). AdjOR for 1 unit increase in LDL-levels was 0.95 (95% CI, 0.82-1.10). At 2-years, 1188 patients had follow-up MRI. CMBs progression was observed in 44 (8.0%) statin users and 47 (7.4%) non-statin users. Of these patients 64 (70.3%) developed a single new CMB, 14 (15.4%) developed 2 CMBs and 13 developed more than 3 CMBs. The multivariable adjOR for statin users was 1.09 (95% CI, 0.66-1.80). There was no association between LDL-levels and CMBs progression (adjOR 1.02, 95% CI, 0.79-1.32). At follow-up 14 (1.2%) statin users had ICH vs 16 (1.3%) non-users. The age and sex adjusted Hazard Ratio (adjHR) was 0.75 (95% CI, 0.36-1.55). Results remained robust in sensitivity analyses excluding participants without anticoagulants. CONCLUSIONS In this prospective cohort of patients with AF, a population at increased hemorrhagic risk due to anticoagulation, the use of statins was not associated with an increased risk of CMBs

Snipe taxonomy based on vocal and non-vocal sound displays: the South American Snipe is two species

We analysed breeding sounds of the two subspecies of South American Snipe Gallinago paraguaiae paraguaiae and Gallinago paraguaiae magellanica to determine whether they might be different species: loud vocalizations given on the ground, and the tail‐generated Winnow given in aerial display. Sounds of the two taxa differ qualitatively and quantitatively. Both taxa utter two types of ground call. In G. p. paraguaiae, the calls are bouts of identical sound elements repeated rhythmically and slowly (about five elements per second (Hz)) or rapidly (about 11 Hz). One call of G. p. magellanica is qualitatively similar to those of G. p. paraguaiae but sound elements are repeated more slowly (about 3 Hz). However, its other call type differs strikingly: it is a bout of rhythmically repeated sound couplets, each containing two kinds of sound element. The Winnow of G. p. paraguaiae is a series of sound elements that gradually increase in duration and energy; by contrast, that of G. p. magellanica has two or more kinds of sound element that roughly alternate and are repeated as sets, imparting a stuttering quality. Sounds of the related Puna Snipe (Gallinago andina) resemble but differ quantitatively from those of G. p. paraguaiae. Differences in breeding sounds of G. p. paraguaiae and G. p. magellanica are strong and hold throughout their geographical range. Therefore we suggest that the two taxa be considered different species: G. paraguaiae east of the Andes in much of South America except Patagonia, and G. magellanica in central and southern Chile, Argentina east of the Andes across Patagonia, and Falklands/Malvinas.Fil: Miller, Edward H.. Memorial University Of Newfoundland; CanadáFil: Areta, Juan Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta. Instituto de Bio y Geociencias del NOA. Universidad Nacional de Salta. Facultad de Ciencias Naturales. Museo de Ciencias Naturales. Instituto de Bio y Geociencias del NOA; ArgentinaFil: Jaramillo, Alvaro. San Francisco Bay Bird Observatory; Estados UnidosFil: Imberti, Santiago. Asociación Ambiente Sur, Rio Gallegos; ArgentinaFil: Matus, Ricardo. Kilómetro 7 Sur; Chil