Moment-angle complexes, monomial ideals, and Massey products

Associated to every finite simplicial complex K there is a "moment-angle" finite CW-complex, Z_K; if K is a triangulation of a sphere, Z_K is a smooth, compact manifold. Building on work of Buchstaber, Panov, and Baskakov, we study the cohomology ring, the homotopy groups, and the triple Massey products of a moment-angle complex, relating these topological invariants to the algebraic combinatorics of the underlying simplicial complex. Applications to the study of non-formal manifolds and subspace arrangements are given.Comment: 30 pages. Published versio

Local systems on complements of arrangements of smooth, complex algebraic hypersurfaces

We consider smooth, complex quasi-projective varieties $U$ which admit a compactification with a boundary which is an arrangement of smooth algebraic hypersurfaces. If the hypersurfaces intersect locally like hyperplanes, and the relative interiors of the hypersurfaces are Stein manifolds, we prove that the cohomology of certain local systems on $U$ vanishes. As an application, we show that complements of linear, toric, and elliptic arrangements are both duality and abelian duality spaces.Comment: 14 pages. Some corrections, more details, and updates to reference

Bounds on Long-Lived Relics from Diffuse Gamma Ray Observations

We place bounds on long-lived primordial relics using measurements of the diffuse gamma ray spectrum from EGRET and COMPTEL. Bounds are derived for both radiative and hadronic decays with stronger bounds applying for the latter decay mode. We present an exclusion plot in the relic density-lifetime plane that shows nontrivial dependence on the mass of the relic. The violations of scaling with mass are a consequence of the different possible scattering processes which lead to differing electromagnetic showering profiles. The tightest bounds for shorter lifetimes come from COMPTEL observations of the low energy part of the spectrum, while for longer lifetimes the highest observable energy at EGRET gives the tightest bounds. We discuss the implications of the bounds for dark matter candidates as well as relics that have a mass density substantially below the critical density. These bounds can be utilized to eliminate models that contain relics with lifetimes longer than $10^{-4}$ times the age of the universe.Comment: 31 pages, LaTeX, uses epsf.sty, 12 figures. Figs. 8-12 replaced to correct a normalization problem; bounds slightly modified, conclusions unchanged; minor typos correcte

Abelian duality and propagation of resonance

We explore the relationship between a certain "abelian duality" property of spaces and the propagation properties of their cohomology jump loci. To that end, we develop the analogy between abelian duality spaces and those spaces which possess what we call the "EPY property." The same underlying homological algebra allows us to deduce the propagation of jump loci: in the former case, characteristic varieties propagate, and in the latter, the resonance varieties. We apply the general theory to arrangements of linear and elliptic hyperplanes, as well as toric complexes, right-angled Artin groups, and Bestvina-Brady groups. Our approach brings to the fore the relevance of the Cohen-Macaulay condition in this combinatorial context.Comment: 30 page

Coarse Brownian Dynamics for Nematic Liquid Crystals: Bifurcation Diagrams via Stochastic Simulation

We demonstrate how time-integration of stochastic differential equations (i.e. Brownian dynamics simulations) can be combined with continuum numerical bifurcation analysis techniques to analyze the dynamics of liquid crystalline polymers (LCPs). Sidestepping the necessity of obtaining explicit closures, the approach analyzes the (unavailable in closed form) coarse macroscopic equations, estimating the necessary quantities through appropriately initialized, short bursts of Brownian dynamics simulation. Through this approach, both stable and unstable branches of the equilibrium bifurcation diagram are obtained for the Doi model of LCPs and their coarse stability is estimated. Additional macroscopic computational tasks enabled through this approach, such as coarse projective integration and coarse stabilizing controller design, are also demonstrated

Energy-dependent quenching adjusts the excitation diffusion length to regulate photosynthetic light harvesting

An important determinant of crop yields is the regulation of photosystem II (PSII) light harvesting by energy-dependent quenching (qE). However, the molecular details of excitation quenching have not been quantitatively connected to the PSII yield, which only emerges on the 100 nm scale of the grana membrane and determines flux to downstream metabolism. Here, we incorporate excitation dissipation by qE into a pigment-scale model of excitation transfer and trapping for a 200 nm x 200 nm patch of the grana membrane. We demonstrate that single molecule measurements of qE are consistent with a weak-quenching regime. Consequently, excitation transport can be rigorously coarse-grained to a 2D random walk with an excitation diffusion length determined by the extent of quenching. A diffusion-corrected lake model substantially improves the PSII yield determined from variable chlorophyll fluorescence measurements and offers an improved model of PSII for photosynthetic metabolism.Comment: 19 pages, 4 figures, 3 supplementary figure