Toward realistic simulations of magneto-thermal winds from weakly-ionized protoplanetary disks

Protoplanetary disks (PPDs) accrete onto their central T Tauri star via magnetic stresses. When the effect of ambipolar diffusion (AD) is included, and in the presence of a vertical magnetic field, the disk remains laminar between 1-5 au, and a magnetocentrifugal disk wind forms that provides an important mechanism for removing angular momentum. We present global MHD simulations of PPDs that include Ohmic resistivity and AD, where the time-dependent gas-phase electron and ion fractions are computed under FUV and X-ray ionization with a simplified recombination chemistry. To investigate whether the mass loading of the wind is potentially affected by the limited vertical extent of our existing simulations, we attempt to develop a model of a realistic disk atmosphere. To this end, by accounting for stellar irradiation and diffuse reprocessing of radiation, we aim at improving our models towards more realistic thermodynamic properties.Comment: 8 pages, 3 figures, ASTRONUM-2016 proceeding

fNL - gNL mixing in the matter density field at higher orders

In this paper we examine how primordial non-Gaussianity contributes to nonlinear perturbative orders in the expansion of the density field at large scales in the matter dominated era. General Relativity is an intrinsically nonlinear theory, establishing a nonlinear relation between the metric and the density field. Representing the metric perturbations with the curvature perturbation zeta, it is known that nonlinearity produces effective non-Gaussian terms in the nonlinear perturbations of the matter density field, even if the primordial zeta is Gaussian. Here we generalise these results to the case of a non-Gaussian primordial zeta. Using a standard parametrization of primordial non-Gaussianity in zeta in terms of fNL, gNL, hNL..., we show how at higher order (from third and higher) nonlinearity also produces a mixing of these contributions to the density field at large scales, e.g. both fNL and gNL contribute to the third order in the density contrast. This is the main result of this paper. Our analysis is based on the synergy between a gradient expansion (aka long-wavelength approximation) and standard perturbation theory at higher order. In essence, mathematically the equations for the gradient expansion are equivalent to those of first order perturbation theory, thus first-order results convert into gradient expansion results and, vice versa, the gradient expansion can be used to derive results in perturbation theory at higher order and large scales

The pause-initiation limit restricts transcription activation in human cells.

Eukaryotic gene transcription is often controlled at the level of RNA polymerase II (Pol II) pausing in the promoter-proximal region. Pausing Pol II limits the frequency of transcription initiation ('pause-initiation limit'), predicting that the pause duration must be decreased for transcriptional activation. To test this prediction, we conduct a genome-wide kinetic analysis of the heat shock response in human cells. We show that the pause-initiation limit restricts transcriptional activation at most genes. Gene activation generally requires the activity of the P-TEFb kinase CDK9, which decreases the duration of Pol II pausing and thereby enables an increase in the productive initiation frequency. The transcription of enhancer elements is generally not pause limited and can be activated without CDK9 activity. Our results define the kinetics of Pol II transcriptional regulation in human cells at all gene classes during a natural transcription response

Toward a hybrid dynamo model for the Milky Way

(Abridged) Based on the rapidly increasing all-sky data of Faraday rotation measures and polarised synchrotron radiation, the Milky Way's magnetic field is now modelled with an unprecedented level of detail and complexity. We aim to complement this heuristic approach with a physically motivated, quantitative Galactic dynamo model -- a model that moreover allows for the evolution of the system as a whole, instead of just solving the induction equation for a fixed static disc. Building on the framework of mean-field magnetohydrodynamics and extending it to the realm of a hybrid evolution, we perform three-dimensional global simulations of the Galactic disc. Closure coefficients embodying the mean-field dynamo are calibrated against resolved box simulations of supernova-driven interstellar turbulence. The emerging dynamo solutions comprise a mixture of the dominant axisymmetric S0 mode, with even parity, and a subdominant A0 mode, with odd parity. Notably, such a superposition of modes creates a strong localised vertical field on one side of the Galactic disc. We moreover find significant radial pitch angles, which decay with radius -- explained by flaring of the disc. In accordance with previous work, magnetic instabilities appear to be restricted to the less-stirred outer Galactic disc. Their main effect is to create strong fields at large radii such that the radial scale length of the magnetic field increases from 4 kpc (for the case of a mean-field dynamo alone) to about 10 kpc in the hybrid models. There remain aspects (e.g., spiral arms, X-shaped halo fields, fluctuating fields) that are not captured by the current model and that will require further development towards a fully dynamical evolution. Nevertheless, the work presented demonstrates that a hybrid modelling of the Galactic dynamo is feasible and can serve as a foundation for future efforts.Comment: 12 pages, 12 figures, 2 tables, accepted for publication in A&

Do magnetic fields influence gas rotation in galaxies?

We aim to estimate the contribution of the radial component of the Lorentz force to the gas rotation in several types of galaxies. Using typical parameters for the exponential scale of synchrotron emission and the scale length of HI gas, under the assumption of equipartition between the energies of cosmic rays and total magnetic fields, we derive the Lorentz force and compare it to the gravitational force in the radial component of the momentum equation. We distinguish the different contributions between the large-scale and the small-scale turbulent fields by Reynolds averaging. We compare these findings with a dynamical dynamo model. We find a possible reduction of circular gas velocity in the very outer parts and an increase inside a radius of four times the synchrotron scale length. Sufficiently localized radial reversals of the magnetic field may cause characteristic modulations in the gas rotation curve with typical amplitudes of 10-20 km/s. It is unlikely that the magnetic field contributes to the flat rotation in the outer parts of galaxies. If anything, it will \emph{impede} the gravitationally supported rotation, demanding for an even higher halo mass to explain the observed rotation profile. We speculate that this may have consequences for ram pressure stripping and the truncation of the stellar disc

New scaling for the alpha effect in slowly rotating turbulence

Using simulations of slowly rotating stratified turbulence, we show that the alpha effect responsible for the generation of astrophysical magnetic fields is proportional to the logarithmic gradient of kinetic energy density rather than that of momentum, as was previously thought. This result is in agreement with a new analytic theory developed in this paper for large Reynolds numbers. Thus, the contribution of density stratification is less important than that of turbulent velocity. The alpha effect and other turbulent transport coefficients are determined by means of the test-field method. In addition to forced turbulence, we also investigate supernova-driven turbulence and stellar convection. In some cases (intermediate rotation rate for forced turbulence, convection with intermediate temperature stratification, and supernova-driven turbulence) we find that the contribution of density stratification might be even less important than suggested by the analytic theory.Comment: 10 pages, 9 figures, revised version, Astrophys. J., in pres

Orbital Evolution of Moons in Weakly Accreting Circumplanetary Disks

We investigate the formation of hot and massive circumplanetary disks (CPDs) and the orbital evolution of satellites formed in these disks. Because of the comparatively small size-scale of the sub-disk, quick magnetic diffusion prevents the magnetorotational instability (MRI) from being well-developed at ionization levels that would allow MRI in the parent protoplanetary disk. In the absence of significant angular momentum transport, continuous mass supply from the parental protoplanetary disk leads to the formation of a massive CPD. We have developed an evolutionary model for this scenario and have estimated the orbital evolution of satellites within the disk. We find, in a certain temperature range, that inward migration of a satellite can be stopped by a change in the structure due to the opacity transitions. Moreover, by capturing second and third migrating satellites in mean motion resonances, a compact system in Laplace resonance can be formed in our disk models.Comment: 10 pages, 9 figure

Mean-field and direct numerical simulations of magnetic flux concentrations from vertical field

Strongly stratified hydromagnetic turbulence has previously been found to produce magnetic flux concentrations if the domain is large enough compared with the size of turbulent eddies. Mean-field simulations (MFS) using parameterizations of the Reynolds and Maxwell stresses show a negative effective magnetic pressure instability and have been able to reproduce many aspects of direct numerical simulations (DNS) regarding the growth rate of this large-scale instability, shape of the resulting magnetic structures, and their height as a function of magnetic field strength. Unlike the case of an imposed horizontal field, for a vertical one, magnetic flux concentrations of equipartition strength with the turbulence can be reached. This results in magnetic spots that are reminiscent of sunspots. Here we want to find out under what conditions magnetic flux concentrations with vertical field occur and what their internal structure is. We use a combination of MFS, DNS, and implicit large-eddy simulations to characterize the resulting magnetic flux concentrations in forced isothermal turbulence with an imposed vertical magnetic field. We confirm earlier results that in the kinematic stage of the large-scale instability the horizontal wavelength of structures is about 10 times the density scale height. At later times, even larger structures are being produced in a fashion similar to inverse spectral transfer in helically driven turbulence. Using turbulence simulations, we find that magnetic flux concentrations occur for different values of the Mach number between 0.1 and 0.7. DNS and MFS show magnetic flux tubes with mean-field energies comparable to the turbulent kinetic energy. The resulting vertical magnetic flux tubes are being confined by downflows along the tubes and corresponding inflow from the sides, which keep the field concentrated.Comment: 16 pages, 22 figures, Astron. Astrophys., in pres

Charles Nuitter : des scènes parisiennes à la bibliothèque de l\u27Opéra

Intervention au colloque sur "L\u27histoire des bibliothécaires" organisé par le Centre de recherche en histoire du livre à la Bibliothèque municipale de Lyon du 27 au 29 novembre 2003. Charles Nuitter, d\u27abord avocat puis librettiste, est le fondateur de la bibliothèque et des archives de l\u27Opéra. Histoire de la fondation de cette bibliothèque particulière