The Discovery of Trissolcus japonicus (Hymenoptera: Scelionidae) in Michigan

The invasive brown marmorated stink bug, Halyomorpha halys (Stål), is a pest of growing economic importance in the United States, the control of which currently relies on pesticide applications. Biological control could provide sustainable and long-term control but classical biological control agents have not yet been approved. Adventive populations of a potential biological control agents, the Samurai wasp, Trissolcus japonicus (Ashmead), have been found in the United States, first in Maryland in 2014, expanding its range west to Ohio by 2017. Trissolcus japonicus is a highly effective parasitoid of H. halys eggs, but its redistribution and augmentative releases are restricted to states where it has been detected in the wild. To assess the presence of T. japonicus in Michigan and attack rates of H. halys by native natural enemies we deployed 189 H. halys egg masses at ten sites in lower Michigan between May and October in 2018. In addition, we deployed 51 native stink bug egg masses at the same sites to evaluate potential non-target effects of T. japonicus in the field, which were shown to occur in laboratory studies. We found T. japonicus in a single H. halys egg mass, which constitutes the first record of this Asian parasitoid in Michigan. Native predators and parasitoids caused minimal mortality of H. halys eggs and we did not find evidence of non-target effects of T. japonicus on native stink bug species. These findings open the door to initiation of a classical biological control program using an efficient, coevolved parasitoid from the native range of H. halys

Game-theoretic versions of strong law of large numbers for unbounded variables

We consider strong law of large numbers (SLLN) in the framework of game-theoretic probability of Shafer and Vovk (2001). We prove several versions of SLLN for the case that Reality's moves are unbounded. Our game-theoretic versions of SLLN largely correspond to standard measure-theoretic results. However game-theoretic proofs are different from measure-theoretic ones in the explicit consideration of various hedges. In measure-theoretic proofs existence of moments are assumed, whereas in our game-theoretic proofs we assume availability of various hedges to Skeptic for finite prices

On an Asymptotic Series of Ramanujan

An asymptotic series in Ramanujan's second notebook (Entry 10, Chapter 3) is concerned with the behavior of the expected value of $\phi(X)$ for large $\lambda$ where $X$ is a Poisson random variable with mean $\lambda$ and $\phi$ is a function satisfying certain growth conditions. We generalize this by studying the asymptotics of the expected value of $\phi(X)$ when the distribution of $X$ belongs to a suitable family indexed by a convolution parameter. Examples include the problem of inverse moments for distribution families such as the binomial or the negative binomial.Comment: To appear, Ramanujan

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

Background The only known albino gorilla, named Snowflake, was a male wild born individual from Equatorial Guinea who lived at the Barcelona Zoo for almost 40 years. He was diagnosed with non-syndromic oculocutaneous albinism, i.e. white hair, light eyes, pink skin, photophobia and reduced visual acuity. Despite previous efforts to explain the genetic cause, this is still unknown. Here, we study the genetic cause of his albinism and making use of whole genome sequencing data we find a higher inbreeding coefficient compared to other gorillas. Results We successfully identified the causal genetic variant for Snowflake¿s albinism, a non-synonymous single nucleotide variant located in a transmembrane region of SLC45A2. This transporter is known to be involved in oculocutaneous albinism type 4 (OCA4) in humans. We provide experimental evidence that shows that this amino acid replacement alters the membrane spanning capability of this transmembrane region. Finally, we provide a comprehensive study of genome-wide patterns of autozygogosity revealing that Snowflake¿s parents were related, being this the first report of inbreeding in a wild born Western lowland gorilla. Conclusions In this study we demonstrate how the use of whole genome sequencing can be extended to link genotype and phenotype in non-model organisms and it can be a powerful tool in conservation genetics (e.g., inbreeding and genetic diversity) with the expected decrease in sequencing cost. Keywords: Gorilla; Albinism; Inbreeding; Genome; Conservatio

Genome data from a sixteenth century pig illuminate modern breed relationships

Ancient DNA (aDNA) provides direct evidence of historical events that have modeled the genome of modern individuals. In livestock, resolving the differences between the effects of initial domestication and of subsequent modern breeding is not straight forward without aDNA data. Here, we have obtained shotgun genome sequence data from a sixteenth century pig from Northeastern Spain (Montsoriu castle), the ancient pig was obtained from an extremely well-preserved and diverse assemblage. In addition, we provide the sequence of three new modern genomes from an Iberian pig, Spanish wild boar and a Guatemalan Creole pig. Comparison with both mitochondrial and autosomal genome data shows that the ancient pig is closely related to extant Iberian pigs and to European wild boar. Although the ancient sample was clearly domestic, admixture with wild boar also occurred, according to the D-statistics. The close relationship between Iberian, European wild boar and the ancient pig confirms that Asian introgression in modern Iberian pigs has not existed or has been negligible. In contrast, the Guatemalan Creole pig clusters apart from the Iberian pig genome, likely due to introgression from international breeds

Combined burden and functional impact tests for cancer driver discovery using DriverPower

The discovery of driver mutations is one of the key motivations for cancer genome sequencing. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumour types, we describe DriverPower, a software package that uses mutational burden and functional impact evidence to identify driver mutations in coding and non-coding sites within cancer whole genomes. Using a total of 1373 genomic features derived from public sources, DriverPower's background mutation model explains up to 93% of the regional variance in the mutation rate across multiple tumour types. By incorporating functional impact scores, we are able to further increase the accuracy of driver discovery. Testing across a collection of 2583 cancer genomes from the PCAWG project, DriverPower identifies 217 coding and 95 non-coding driver candidates. Comparing to six published methods used by the PCAWG Drivers and Functional Interpretation Working Group, DriverPower has the highest F1 score for both coding and non-coding driver discovery. This demonstrates that DriverPower is an effective framework for computational driver discovery

Anatomy of F_D-Term Hybrid Inflation

We analyze the cosmological implications of F-term hybrid inflation with a subdominant Fayet--Iliopoulos D-term whose presence explicitly breaks a D-parity in the inflaton-waterfall sector. This scenario of inflation, which is called F_D-term hybrid model for brevity, can naturally predict lepton number violation at the electroweak scale, by tying the mu-parameter of the MSSM to an SO(3)-symmetric Majorana mass m_N, via the vacuum expectation value of the inflaton field. We show how a negative Hubble-induced mass term in a next-to-minimal extension of supergravity helps to accommodate the present CMB data and considerably weaken the strict constraints on the theoretical parameters, resulting from cosmic string effects on the power spectrum P_R. The usual gravitino overabundance constraint may be significantly relaxed in this model, once the enormous entropy release from the late decays of the ultraheavy waterfall gauge particles is properly considered. As the Universe enters a second thermalization phase involving a very low reheat temperature, which might be as low as about 0.3 TeV, thermal electroweak-scale resonant leptogenesis provides a viable mechanism for successful baryogenesis, while thermal right-handed sneutrinos emerge as new possible candidates for solving the cold dark matter problem. In addition, we discuss grand unified theory realizations of F_D-term hybrid inflation devoid of cosmic strings and monopoles, based on the complete breaking of an SU(2) subgroup. The F_D-term hybrid model offers rich particle-physics phenomenology, which could be probed at high-energy colliders, as well as in low-energy experiments of lepton flavour or number violation.Comment: 73 pages, LaTeX, minor rewordings, references added, to appear in JHE

Searching for planar signatures in WMAP

We search for planar deviations of statistical isotropy in the Wilkinson Microwave Anisotropy Probe (WMAP) data by applying a recently introduced angular-planar statistics both to full-sky and to masked temperature maps, including in our analysis the effect of the residual foreground contamination and systematics in the foreground removing process as sources of error. We confirm earlier findings that full-sky maps exhibit anomalies at the planar ($l$) and angular ($\ell$) scales $(l,\ell)=(2,5),(4,7),$ and $(6,8)$, which seem to be due to unremoved foregrounds since this features are present in the full-sky map but not in the masked maps. On the other hand, our test detects slightly anomalous results at the scales $(l,\ell)=(10,8)$ and $(2,9)$ in the masked maps but not in the full-sky one, indicating that the foreground cleaning procedure (used to generate the full-sky map) could not only be creating false anomalies but also hiding existing ones. We also find a significant trace of an anomaly in the full-sky map at the scale $(l,\ell)=(10,5)$, which is still present when we consider galactic cuts of 18.3% and 28.4%. As regards the quadrupole ($\ell=2$), we find a coherent over-modulation over the whole celestial sphere, for all full-sky and cut-sky maps. Overall, our results seem to indicate that current CMB maps derived from WMAP data do not show significant signs of anisotropies, as measured by our angular-planar estimator. However, we have detected a curious coherence of planar modulations at angular scales of the order of the galaxy's plane, which may be an indication of residual contaminations in the full- and cut-sky maps.Comment: 15 pages with pdf figure