Measuring thermodynamic length

Thermodynamic length is a metric distance between equilibrium thermodynamic states. Among other interesting properties, this metric asymptotically bounds the dissipation induced by a finite time transformation of a thermodynamic system. It is also connected to the Jensen-Shannon divergence, Fisher information and Rao's entropy differential metric. Therefore, thermodynamic length is of central interest in understanding matter out-of-equilibrium. In this paper, we will consider how to define thermodynamic length for a small system described by equilibrium statistical mechanics and how to measure thermodynamic length within a computer simulation. Surprisingly, Bennett's classic acceptance ratio method for measuring free energy differences also measures thermodynamic length.Comment: 4 pages; Typos correcte

Anisotropic J/ΨJ/\Psi suppression in nuclear collisions

The nuclear overlap zone in non-central relativistic heavy ion collisions is azimuthally very asymmetric. By varying the angle between the axes of deformation and the transverse direction of the pair momenta, the suppression of $J/\Psi$ and $\Psi'$ will oscillate in a characteristic way. Whereas the average suppression is mostly sensitive to the early and high density stages of the collision, the amplitude is more sensitive to the late stages. This effect provides additional information on the $J/\Psi$ suppression mechanisms such as direct absorption on participating nucleons, comover absorption or formation of a quark-gluon plasma. The behavior of the average $J/\Psi$ suppression and its amplitude with centrality of the collisions is discussed for SPS, RHIC and LHC energies with and without a phase transition.Comment: Revised and extended version, new figure

Traces of Thermalization from Transverse Momentum Fluctuations in Nuclear Collisions

Scattering of particles produced in Au+Au collisions at RHIC can wrestle the system into a state near local thermal equilibrium. I illustrate how measurements of the centrality dependence of the mean transverse momentum and its fluctuations can exhibit this thermalization.Comment: 4 pages, 2 eps figures, final version to appear in PR

The length of time's arrow

An unresolved problem in physics is how the thermodynamic arrow of time arises from an underlying time reversible dynamics. We contribute to this issue by developing a measure of time-symmetry breaking, and by using the work fluctuation relations, we determine the time asymmetry of recent single molecule RNA unfolding experiments. We define time asymmetry as the Jensen-Shannon divergence between trajectory probability distributions of an experiment and its time-reversed conjugate. Among other interesting properties, the length of time's arrow bounds the average dissipation and determines the difficulty of accurately estimating free energy differences in nonequilibrium experiments

Online UV imaging of API-excipient mixtures during dissolution

The Sirius SDI has been shown to provide real-time information of the dissolution process at the surface of drug compacts (1, 2). Here, the release mechanism of Carvedilol (CAR), a BCS class II drug, with either HPMC or Eudragit EPO was investigated

Sialic Acid Mutarotation Is Catalyzed by the Escherichia coli β-Propeller Protein YjhT

The acquisition of host-derived sialic acid is an important virulence factor for some bacterial pathogens, but in vivo this sugar acid is sequestered in sialoconjugates as the {alpha}-anomer. In solution, however, sialic acid is present mainly as the β-anomer, formed by a slow spontaneous mutarotation. We studied the Escherichia coli protein YjhT as a member of a family of uncharacterized proteins present in many sialic acid-utilizing pathogens. This protein is able to accelerate the equilibration of the {alpha}- and β-anomers of the sialic acid N-acetylneuraminic acid, thus describing a novel sialic acid mutarotase activity. The structure of this periplasmic protein, solved to 1.5Å resolution, reveals a dimeric 6-bladed unclosed β-propeller, the first of a bacterial Kelch domain protein. Mutagenesis of conserved residues in YjhT demonstrated an important role for Glu-209 and Arg-215 in mutarotase activity. We also present data suggesting that the ability to utilize {alpha}-N-acetylneuraminic acid released from complex sialoconjugates in vivo provides a physiological advantage to bacteria containing YjhT