270 research outputs found
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Compartmentalization and ventilation system impacts on air and contaminant transport for multifamily buildings
Provision of acceptable indoor air quality in multifamily buildings (MFBs) depends on the interior air flows that impact dilution of contaminants, cross-contamination between units and building energy use. The airtightness of interior partitions and design of ventilation systems in MFBs determine the flows across building partitions. These flows change the total ventilation rate for the building and individual units, and impact the mixing of air and contaminants between apartment units or with common spaces. This study examines the changes in air flow and contaminant transport in MFBs using combined CONTAM/EnergyPlus models. Key parameters were systematically varied, including climate, apartment airtightness, and mechanical ventilation system type. Simulations were performed for mid-rise buildings with and without an enclosed common corridor, and a 20-story high-rise building. Contaminants simulated in the analysis were PM2.5, formaldehyde, water vapor, and CO2. Key results of this work are that current airtightness requirements in ASHRAE 62.2 sufficiently limit transport of key contaminants, independent of the type of ventilation system across all three building typologies, and significantly reduce energy use in colder climates. The results of this work are intended to assist codes and standards bodies in setting appropriate airtightness limits and ventilation system design guidelines for MFBs
Programmable disorder in random DNA tilings
Scaling up the complexity and diversity of synthetic molecular structures will require strategies that exploit the inherent stochasticity of molecular systems in a controlled fashion. Here we demonstrate a framework for programming random DNA tilings and show how to control the properties of global patterns through simple, local rules. We constructed three general forms of planar network—random loops, mazes and trees—on the surface of self-assembled DNA origami arrays on the micrometre scale with nanometre resolution. Using simple molecular building blocks and robust experimental conditions, we demonstrate control of a wide range of properties of the random networks, including the branching rules, the growth directions, the proximity between adjacent networks and the size distribution. Much as combinatorial approaches for generating random one-dimensional chains of polymers have been used to revolutionize chemical synthesis and the selection of functional nucleic acids, our strategy extends these principles to random two-dimensional networks of molecules and creates new opportunities for fabricating more complex molecular devices that are organized by DNA nanostructures
Coordinations between gene modules control the operation of plant amino acid metabolic networks
<p>Abstract</p> <p>Background</p> <p>Being sessile organisms, plants should adjust their metabolism to dynamic changes in their environment. Such adjustments need particular coordination in branched metabolic networks in which a given metabolite can be converted into multiple other metabolites via different enzymatic chains. In the present report, we developed a novel "Gene Coordination" bioinformatics approach and use it to elucidate adjustable transcriptional interactions of two branched amino acid metabolic networks in plants in response to environmental stresses, using publicly available microarray results.</p> <p>Results</p> <p>Using our "Gene Coordination" approach, we have identified in Arabidopsis plants two oppositely regulated groups of "highly coordinated" genes within the branched Asp-family network of Arabidopsis plants, which metabolizes the amino acids Lys, Met, Thr, Ile and Gly, as well as a single group of "highly coordinated" genes within the branched aromatic amino acid metabolic network, which metabolizes the amino acids Trp, Phe and Tyr. These genes possess highly coordinated adjustable negative and positive expression responses to various stress cues, which apparently regulate adjustable metabolic shifts between competing branches of these networks. We also provide evidence implying that these highly coordinated genes are central to impose intra- and inter-network interactions between the Asp-family and aromatic amino acid metabolic networks as well as differential system interactions with other growth promoting and stress-associated genome-wide genes.</p> <p>Conclusion</p> <p>Our novel Gene Coordination elucidates that branched amino acid metabolic networks in plants are regulated by specific groups of highly coordinated genes that possess adjustable intra-network, inter-network and genome-wide transcriptional interactions. We also hypothesize that such transcriptional interactions enable regulatory metabolic adjustments needed for adaptation to the stresses.</p
Comparison of Land Cover/Land Use and Habitat Classification Systems for Habitat Mapping from Space: Strengths and Weaknesses Evidenced in Mediterranean Sites of Natura 2000 Network
At a global level, protected sites have been established for the primary purpose of conserving biodiversity, with survey and monitoring of habitats undertaken largely within their boundaries. However, because of increasing human populations with greater access to resources, there is a need to now consider monitoring anthropic activities in the surrounding landscapes as pressures and disturbances are impacting on the functioning and biodiversity values of many protected sites. Earth Observation (EO) data acquired across a range of spatial and temporal scales offer new opportunities for monitoring biodiversity over varying time-scales, either through direct or indirect mapping of species or habitats. However, Land Cover (LC) and/or Land Use (LU), rather than habitat maps are generated in many national and international programs and, whilst the translation from one classification to the other is desirable, differences in definitions and criteria have so far limited the establishment of a unified approach. Focusing on both natural and non-natural environments associated with Natura 2000 sites in the Mediterranean, this paper considers the extent to which three common LC/LU taxonomies (CORINE, the Food and Agricultural Organisation (FAO) Land Cover Classification System (FAO-LCCS) and the IGBP) can be translated to habitat taxonomies with minimum use of additional environmental attributes and/or in situ data. A qualitative and quantitative analysis based on the Jaccard's index established the FAO-LCCS as being the most useful taxonomy for harmonizing LC/LU maps with different legends and dealing with the complexity of habitat description and as a framework for translating EO-derived LC/LU to habitat categories. As demonstration, a habitat map of a wetland site is obtained through translation of the LCCS taxonomy
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The impact of simplified window and exhaust fan assumptions on indoor air quality in multifamily buildings
In residential buildings, the indoor air quality can be significantly affected by ventilation measures initiated by occupants, including the operation of windows and in-unit exhaust fans in kitchens and bathrooms. Many simulations simplify these factors by disregarding window opening behaviors and using fixed schedules for exhaust fan operation across all residential units. To estimate the impact of these simplifications in the U.S. context, this study used coupled CONTAM and EnergyPlus models to simulate airflow and contaminant transport in multifamily buildings. The coupled models parametrically varied climate zone, building airtightness, and mechanical ventilation system types. The study conducted a sensitivity analysis on two key occupant behaviors: (1) operating kitchen and bathroom exhausts on different schedules in individual dwelling units, and (2) scheduling open windows on ground and top floors. The simplified assumptions (i.e. uniform in-unit exhaust fan operation and window operation) had a minimal impact on inter-unit air flow and contaminant transport simulations across a broad range of building air leakage and mechanical ventilation system types. These findings suggest that for buildings with tight construction it is reasonable for most modelling and simulation efforts to ignore the effects of non-uniform exhaust fan operation and window opening
Dynamics of different-sized solid-state nanocrystals as tracers for a drug-delivery system in the interstitium of a human tumor xenograft
Tumor Invasion of Salmonella enterica Serovar Typhimurium Is Accompanied by Strong Hemorrhage Promoted by TNF-α
BACKGROUND:Several facultative anaerobic bacteria with potential therapeutic abilities are known to preferentially colonize solid tumors after systemic administration. How they efficiently find and invade the tumors is still unclear. However, this is an important issue to be clarified when bacteria should be tailored for application in cancer therapy. METHODOLOGY/PRINCIPAL FINDINGS:We describe the initial events of colonization of an ectopic transplantable tumor by Salmonella enterica serovar Typhimurium. Initially, after intravenous administration, bacteria were found in blood, spleen, and liver. Low numbers were also detected in tumors associated with blood vessels as could be observed by immunohistochemistry. A rapid increase of TNF-alpha in blood was observed at that time, in addition to other pro-inflammatory cytokines. This induced a tremendous influx of blood into the tumors by vascular disruption that could be visualized in H&E stainings and quantified by hemoglobin measurements of tumor homogenate. Most likely, together with the blood, bacteria were flushed into the tumor. In addition, blood influx was followed by necrosis formation, bacterial growth, and infiltration of neutrophilic granulocytes. Depletion of TNF-alpha retarded blood influx and delayed bacterial tumor-colonization. CONCLUSION:Our findings emphasize similarities between Gram-negative tumor-colonizing bacteria and tumor vascular disrupting agents and show the involvement of TNF-alpha in the initial phase of tumor-colonization by bacteria
Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.)
The Role of Magnetic Resonance Imaging in Diagnosis and Management of Breast Cancer
A review of the literature on the current applications of breast magnetic resonance imaging (MRI) indications, their rationale and their place in diagnosis and management of breast cancer was given. Contrast-enhanced breast MRI is developing as a valuable adjunct to mammography and sonography. Its high sensitivity for invasive breast cancer establishes its superiority in evaluation of multifocality/multicentricity, tumor response to neoadjuvant chemotherapy, detection of recurrence, and staging. Emerging applications include spectroscopy, usage of new contrast agents, and MRI-guided interventions, including noninvasive treatment of breast cancer. Its potential benefit in screening high-risk women has yet to be established with prospective studies, particularly with regard to false positive results
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