A direct time series comparison between the La Jolla and Belfast radiocarbon records

For many years it has been widely assumed that the variations in the level of atmospheric carbon-14 were due to statistical fluctuations arising from experimental error. This is understandable since the signal/noise ratio is very low and the time sequences representing the variations are strongly stochastic. Interlaboratory comparisons show that baseline variations in the absolute value of the carbon-14 concentration do exist. However, assuming linearity, the delta 14C values are independent of these. The importance of assessing the quantitive reality of the delta 14C values is based upon their expression of the interplanetary cosmic ray source function, because in the range of 100 to 1000 year periods, there appears to be no evidence that the Earth's magnetic field is the source modulating function. Therefore the modulation is either due to changes in the solar atmosphere propagated out into the solar wind, or extra-heliospheric pressure effects, but these appear to be unlikely for the periods noted here. The recent availability of the new high quality Belfast time sequence of delta 14C now permits a simple mutual assessment of the several sequences which are available. Since the La Jolla record has been a standard for many years , these two were chosen for a simple comparison. Although differences exist, the close agreement between these two sequences, one carried out on White mountain Bristlecone pines, and the other done using Irish peat bog wood, is striking. This correlation between the two strongly reinforces the statistical view that the delta 14C record is that of real interplanetary modulation of the cosmic ray source leading to the generation of atmospheric 14C

The 2-D magnetohydrostatic configurations leading to flares or quiescent filament eruptions

To investigate the cause of flares and quiescent filament eruptions the quasi-static evolution of a magnetohydrostatic (MHS) model was studied. The results lead to a proposal that: the sudden disruption of an active-region filament field configuration and the accompanying flare result from the lack of a neighboring equilibrium state as magnetic shear is increased above the critical value; and a quiescent filament eruption is due to an ideal MHD kink instability of a highly twisted detached flux tube formed by the increase of plasma current flowing along the length of the filament. A numerical solution was developed for the 2-D MHS equation for the self-consistent equilibrium of a filament and overlying coronal magnetic field. Increase of the poloidal current causes increase of magnetic shear. As shear increases past a critical point, there is a discontinuous topological change in the equilibrium configuration. It was proposed that the lack of a neighboring equilibrium triggers a flare. Increase of the axial current results in a detached tube with enough helical twist to be unstable to ideal MHD kink modes. It was proposed that this is the condition for the eruption of a quiescent filament

Half-mass radii for ~7,000 galaxies at 1.0 < z < 2.5: most of the evolution in the mass-size relation is due to color gradients

Radial mass-to-light ratio gradients cause the half-mass and half-light radii of galaxies to differ, potentially biasing studies that use half-light radii. Here we present the largest catalog to date of galaxy half-mass radii at z > 1: 7,006 galaxies in the CANDELS fields at 1.0 < z < 2.5. The sample includes both star-forming and quiescent galaxies with stellar masses 9.0 < log(M_* / M_\odot) < 11.5. We test three methods for calculating half-mass radii from multi-band PSF-matched HST imaging: two based on spatially-resolved SED modeling, and one that uses a rest-frame color profile. All three methods agree, with scatter <~0.3 dex. In agreement with previous studies, most galaxies in our sample have negative color gradients (the centers are redder than the outskirts, and r_e,mass < r_e,light). We find that color gradient strength has significant trends with increasing stellar mass, half-light radius, U-V color, and stellar mass surface density. These trends have not been seen before at z>1. Furthermore, color gradients of star-forming and quiescent galaxies show a similar redshift evolution: they are flat at z>~2, then steeply decrease as redshift decreases. This affects the galaxy mass-size relation. The normalizations of the star-forming and quiescent r_mass-M_* relations are 10-40% smaller than the corresponding r_light-M_* relations; the slopes are ~0.1-0.3 dex shallower. Finally, the half-mass radii of star-forming and quiescent galaxies at M_* = 10^{10.5}M_\odot only grow by ~1%$ and ~8% between z~2.25 and z~1.25. This is significantly less than the ~37% and ~47% size increases found when using the half-light radius.Comment: 18 pages, 10 figures. Accepted to Ap

Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules

The programming of cellular networks to achieve new biological functions depends on the development of genetic tools that link the presence of a molecular signal to gene-regulatory activity. Recently, a set of engineered RNA controllers was described that enabled predictable tuning of gene expression in the yeast Saccharomyces cerevisiae through directed cleavage of transcripts by an RNase III enzyme, Rnt1p. Here, we describe a strategy for building a new class of RNA sensing-actuation devices based on direct integration of RNA aptamers into a region of the Rnt1p hairpin that modulates Rnt1p cleavage rates. We demonstrate that ligand binding to the integrated aptamer domain is associated with a structural change sufficient to inhibit Rnt1p processing. Three tuning strategies based on the incorporation of different functional modules into the Rnt1p switch platform were demonstrated to optimize switch dynamics and ligand responsiveness. We further demonstrated that these tuning modules can be implemented combinatorially in a predictable manner to further improve the regulatory response properties of the switch. The modularity and tunability of the Rnt1p switch platform will allow for rapid optimization and tailoring of this gene control device, thus providing a useful tool for the design of complex genetic networks in yeast

On the formation of coronal cavities

A theoretical study of the formation of a coronal cavity and its relation to a quiescent prominence is presented. It is argued that the formation of a cavity is initiated by the condensation of plasma which is trapped by the coronal magnetic field in a closed streamer and which then flows down to the chromosphere along the field lines due to lack of stable magnetic support against gravity. The existence of a coronal cavity depends on the coronal magnetic field strength; with low strength, the plasma density is not high enough for condensation to occur. Furthermore, we suggest that prominence and cavity material is supplied from the chromospheric level. Whether a coronal cavity and a prominence coexist depends on the magnetic field configuration; a prominence requires stable magnetic support

A closer look at nitrification in pelagic sediments

Nutrient profiles in Southwest Pacific interstitial solutions suggest that in environments of oxic pelagic sedimentation microbially mediated nitrification is recognizable as a two-step process. During the first step partially oxidized nitrogenous intermediaries accumulate in distinctive ammonia and nitrite maxima along with nitrate. During the second step nitrification continues and all intermediate species are fully oxidized to nitrate. Both steps occur within a zone that corresponds in thickness to the biologically active surface layer. Similarly, experimental nitrogen regeneration from decomposition of plankton in seawater (VON BRAND and RAKESTRAW, 1941: VON BRAND et al., 1942) suggests that each step corresponds to a distinct reaction in the microbially mediated transformation of N-org → NH3 → NO2 → NO3. The resolution of distinct reaction zones in pore water nutrient profiles possibly depends on the nature and mode of supply of the organic matter undergoing nitrification or reflects the spatial succession downcore of microbial populations capable of deamination, ammonium oxidation and nitrite oxidation, respectively. Finally, stoichiometric ratios of nutrients in the free water column - here demonstrated on published data from Saanich Inlet - reflect the same two steps of nitrification as delineated by the dissolved pore water species. Future pore water studies should include dissolved oxygen measurements as well as accurate ∑CO2, PO4 and nitrogenous species profiles, to verify and better quantify these separate steps in nitrification mechanism of oxic pelagic sediments

Morphology, dynamics and plasma parameters of plumes and inter-plume regions in solar coronal holes

Coronal plumes, which extend from solar coronal holes (CH) into the high corona and - possibly - into the solar wind (SW), can now continuously be studied with modern telescopes and spectrometers on spacecraft, in addition to investigations from the ground, in particular, during total eclipses. Despite the large amount of data available on these prominent features and related phenomena, many questions remained unanswered as to their generation and relative contributions to the high-speed streams emanating from CHs. An understanding of the processes of plume formation and evolution requires a better knowledge of the physical conditions at the base of CHs, in plumes and in the surrounding inter-plume regions (IPR). More specifically, information is needed on the magnetic field configuration, the electron densities and temperatures, effective ion temperatures, non-thermal motions, plume cross-sections relative to the size of a CH, the plasma bulk speeds, as well as any plume signatures in the SW. In spring 2007, the authors proposed a study on "Structure and dynamics of coronal plumes and inter-plume regions in solar coronal holes" to the International Space Science Institute (ISSI) in Bern to clarify some of these aspects by considering relevant observations and the extensive literature. This review summarizes the results and conclusions of the study. Stereoscopic observations allowed us to include three-dimensional reconstructions of plumes. Multi-instrument investigations carried out during several campaigns led to progress in some areas, such as plasma densities, temperatures, plume structure and the relation to other solar phenomena, but not all questions could be answered concerning the details of plume generation process(es) and interaction with the SW.Comment: To appear on: The Astronomy and Astrophysics Review. 72 pages, 30 figure