Proximate controls on semiarid soil greenhouse gas fluxes across 3 million years of soil development

Soils are important sources and sinks of three greenhouse gases (GHGs): carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O). However, it is unknown whether semiarid landscapes are important contributors to global fluxes of these gases, partly because our mechanistic understanding of soil GHG fluxes is largely derived from more humid ecosystems. We designed this study with the objective of identifying the important soil physical and biogeochemical controls on soil GHG fluxes in semiarid soils by observing seasonal changes in soil GHG fluxes across a three million year substrate age gradient in northern Arizona. We also manipulated soil nitrogen (N) and phosphorus availability with 7 years of fertilization and used regression tree analysis to identify drivers of unfertilized and fertilized soil GHG fluxes. Similar to humid ecosystems, soil N2O flux was correlated with changes in N and water availability and soil CO2 efflux was correlated with changes in water availability and temperature. Soil CH4 uptake was greatest in relatively colder and wetter soils. While fertilization had few direct effects on soil CH4 flux, soil nitrate was an important predictor of soil CH4 uptake in unfertilized soils and soil ammonium was an important predictor of soil CH4 uptake in fertilized soil. Like in humid ecosystems, N gas loss via nitrification or denitrification appears to increase with increases in N and water availability during ecosystem development. Our results suggest that, with some exceptions, the drivers of soil GHG fluxes in semiarid ecosystems are often similar to those observed in more humid ecosystems

Stable isotope discrimination during soil denitrification: Production and consumption of nitrous oxide

Measuring the stable isotope composition of nitrous oxide ( N(2)O) evolved from soil could improve our understanding of the relative contributions of the main microbial processes ( nitrification and denitrification) responsible for N(2)O formation in soil. However, interpretation of the isotopic data in N(2)O is complicated by the lack of knowledge of fractionation parameters by different microbial processes responsible for N(2)O production and consumption. Here we report isotopic enrichment for both nitrogen and oxygen isotopes in two stages of denitrification, N(2)O production and N(2)O reduction. We found that during both N(2)O production and reduction, enrichments were higher for oxygen than nitrogen. For both elements, enrichments were larger for N(2)O production stage than for N(2)O reduction. During gross N(2)O production, the ratio of delta(18)O- to-delta(15)N differed between soils, ranging from 1.6 to 2.7. By contrast, during N(2)O reduction, we observed a constant ratio of delta(18)O- to-delta(15)N with a value near 2.5. If general, this ratio could be used to estimate the proportion of N(2)O being reduced in the soil before escaping into the atmosphere. Because N(2)O- reductase enriches N(2)O in both isotopes, the global reduction of N(2)O consumption by soil may contribute to the globally observed isotopic depletion of atmospheric N(2)O

A positive relationship between the abundance of ammonia oxidizing archaea and natural abundance δ15N of ecosystems

We present a significant relationship between the natural abundance isotopic composition of ecosystem pools and the abundance of a microbial gene. Natural abundance 15N of soils and soil DNA were analysed and compared with archaeal ammonia oxidizer abundance along an elevation gradient in northern Arizona and along a substrate age gradient in Hawai'i. There was a significant positive correlation between the abundance of archaeal amoA genes and natural abundance δ15N of total soil or DNA suggesting that ammonia oxidizing archaea play an important role in ecosystem N release. © 2013 Elsevier Ltd

Global change, nitrification, and denitrification: A review

We reviewed responses of nitrification, denitrification, and soil N2O efflux to elevated CO2, N availability, and temperature, based on published experimental results. We used meta-analysis to estimate the magnitude of response of soil N2O emissions, nitrifying enzyme activity (NEA), denitrifying enzyme activity (DEA), and net and gross nitrification across experiments. We found no significant overall effect of elevated CO2 on N2O fluxes. DEA and NEA significantly decreased at elevated CO2; however, gross nitrification was not modified by elevated CO2, and net nitrification increased. The negative overall response of DEA to elevated CO2 was associated with decreased soil [NO3-], suggesting that reduced availability of electron acceptors may dominate the responses of denitrification to elevated CO2. N addition significantly increased field and laboratory N2O emissions, together with gross and net nitrification, but the effect of N addition on field N2O efflux was not correlated to the amount of N added. The effects of elevated temperature on DEA, NEA, and net nitrification were not significant: The small number of studies available stress the need for more warming experiments in the field. While N addition had large effects on measurements of nitrification and denitrification, the effects of elevated CO2 were less pronounced and more variable, suggesting that increased N deposition is likely to affect belowground N cycling with a magnitude of change that is much larger than that caused by elevated CO2

Tree species and moisture effects on soil sources of N2O: Quantifying contributions from nitrification and denitrification with O-18 isotopes

Nitrous oxide (N2O) is an important greenhouse gas and participates in the destruction of stratospheric ozone. Soil bacteria produce N2O through denitrification and nitrification, but these processes differ radically in substrate requirements and responses to the environment. Understanding the controls over N2O efflux from soils, and how N2O emissions may change with climate warming and altered precipitation, require quantifying the relative contributions from these groups of soil bacteria to the total N2O flux. Here we used ammonium nitrate (NH4NO3, including substrates for both processes) in which the nitrate has been enriched in the stable isotope of oxygen, O-18, to partition microbial sources of N2O, arguing that a molecule of N2O carrying the O-18 labeled will have been produced by denitrification. We compared the influences of six common tree species on the relative contributions of nitrification and denitrification to N2O flux from soils, using soils from the Siberian afforestation experiment. We also altered soil water content, to test whether denitrification becomes a dominant source of N2O when soil water content increases. Tree species altered the proportion of nitrifier and denitrifier-derived N2O. Wetter soils produced more N2O from denitrification, though the magnitude of this effect varied among tree species. This indicates that the roles of denitrification and nitrification vary with tree species, and, that tree species influence soil responses to increased water content

Closely Related Tree Species Differentially Influence the Transfer of Carbon and Nitrogen from Leaf Litter Up the Aquatic Food Web

Decomposing leaf litter in streams provides habitat and nutrition for aquatic insects. Despite large differences in the nutritional qualities of litter among different plant species, their effects on aquatic insects are often difficult to detect. We evaluated how leaf litter of two dominant riparian species (Populus fremontii and P. angustifolia) influenced carbon and nitrogen assimilation by aquatic insect communities, quantifying assimilation rates using stable isotope tracers (13C, 15N). We tested the hypothesis that element fluxes from litter of different plant species better define aquatic insect community structure than insect relative abundances, which often fail. We found that (1) functional communities (defined by fluxes of carbon and nitrogen from leaf litter to insects) were different between leaf litter species, whereas more traditional insect communities (defined by relativized taxa abundances) were not different between leaf litter species, (2) insects assimilated N, but not C, at a higher rate from P. angustifolia litter compared to P. fremontii, even though P. angustifolia decomposes more slowly, and (3) the C:N ratio of material assimilated by aquatic insects was lower for P. angustifolia compared to P. fremontii, indicating higher nutritional quality, despite similar initial litter C:N ratios. These findings provide new evidence for the effects of terrestrial plant species on aquatic ecosystems via their direct influence on the transfer of elements up the food web. We demonstrate how isotopically labeled leaf litter can be used to assess the functioning of insect communities, uncovering patterns undetected by traditional approaches and improving our understanding of the association between food web structure and element cycling

Effects of interactive global changes on methane uptake in an annual grassland.

The future size of the terrestrial methane (CH4) sink of upland soils remains uncertain, along with potential feedbacks to global warming. Much of the uncertainty lies in our lack of knowledge about potential interactive effects of multiple simultaneous global environmental changes. Field CH4 fluxes and laboratory soil CH4 consumption were measured five times during 3 consecutive years in a California annual grassland exposed to 8 years of the full factorial combination of ambient and elevated levels of precipitation, temperature, atmospheric CO2 concentration, and N deposition. Across all sampling dates and treatments, increased precipitation caused a 61% reduction in field CH4 uptake. However, this reduction depended quantitatively on other global change factors. Higher precipitation reduced CH4 uptake when temperature or N deposition (but not both) increased, and under elevated CO2 but only late in the growing season. Warming alone also decreased CH4 uptake early in the growing season, which was partly explained by a decrease in laboratory soil CH4 consumption. Atmospheric CH4 models likely need to incorporate nonadditive interactions, seasonal interactions, and interactions between methanotrophy and methanogenesis. Despite the complexity of interactions we observed in this multifactor experiment, the outcome agrees with results from single‐factor experiments: an increased terrestrial CH4 sink appears less likely than a reduced one