Causes of molecular convergence and parallelism in protein evolution

To what extent is the convergent evolution of protein function attributable to convergent or parallel changes at the amino acid level? The mutations that contribute to adaptive protein evolution may represent a biased subset of all possible beneficial mutations owing to mutation bias and/or variation in the magnitude of deleterious pleiotropy. A key finding is that the fitness effects of amino acid mutations are often conditional on genetic background. This context dependence (epistasis) can reduce the probability of convergence and parallelism because it reduces the number of possible mutations that are unconditionally acceptable in divergent genetic backgrounds. Here, I review factors that influence the probability of replicated evolution at the molecular level

Trace element geochemistry as a tool for interpreting microbialites

Microbialites are critical for documenting early life on earth and-possibly elsewhere in the solar system. However, criteria for microbialite identification are controversial. Trace element geochemistry provides two types of information that aid interpretation of putative microbialites. Firstly, because most microbialites-consist of hydrogenous precipitates, trace elements can be used to investigate the fluids in which the structures formed, thus aiding identification of environments of formation. For example, rare earth elements preserved in microbialites have proven very useful in discriminating depositional environments. Secondly, microbes utilize and concentrate a wide range of elements, including many metals. Preservation of such elemental enrichments may provide a valuable biosignature. Although research in this field is relatively young, high precision, in situ measurement of metals in microbialites using techniques such as laser ablation-inductively coupled plasma-mass spectrometry, now with spatial mapping, have identified consistent enrichments in biologically important metals in microbialites. Hence, trace element studies are finding increasing utility in studying microbialites, and so long as diagenesis and the degree to which specific precipitates represent microenvironments are taken into account, trace element inventories may provide important information about depositional settings and, potentially, metabolic processes within biofilms