Comparison between chironomid-inferred July temperatures and meteorological data AD 1850-2001 from varved Lake Silvaplana, Switzerland

Inferred temperatures from chironomids preserved in the varved sediment of Lake Silvaplana in the Eastern Swiss Alps were compared with instrumental data obtained from a meteorological station in Sils-Maria, on the shore of Lake Silvaplana, for the time interval 1850-2001. At near-annual resolution, the general patterns of chironomid-inferred temperature changes followed the meteorological record over the last ∼150years (r Pearson=0.65, P=0.01) and 87% of the inferences had deviations from the instrumental data below the root-mean-square error of prediction (RMSEP). When the inferences were compared with a 2-year running mean in the meteorological data, 94% of the inferences had differences with the instrumental data below the RMSEP, indicating that more than half of the inaccurate inferences may have been due to errors in varve counting. Larger deviations from the instrumental data were also obtained from samples with low percentages of fossil taxa represented in the training set used for temperature reconstruction and/or assemblages with poor fit to temperature. Changes in total phosphorus (TP, as inferred by diatoms) and/or greater precipitation were possible factors affecting the accuracy of the temperature reconstruction. Although these factors might affect the quantitative estimates, obtaining >80% accurate temperature inferences suggests that chironomid analysis is a reliable tool for reconstructing mean July air temperature quantitatively over the last ∼150years in Lake Silvaplan

Effect of fumonisins and Salmonella on digestive flora profiles assessed using a molecular tool (CE-SSCP).

Fumonisins (FB) are mycotoxins frequently found in vegetal feedstuffs, especially in maize used for pig feeding. Among fumonisins, FB1 was the better described toxin. It caused pulmonary and hepatic damages as well as immune response disorders in pigs that were recognised as especially sensitive to FB Intoxication. The FB1 immunosuppressor induced a higher susceptibility of pigs to gut pathogens such as E coli. Effects on Salmonella have poorly been studied despite the frequent asymptomatic carnage in pigs and the presumptive role of nora equilibrium on prevention of Salmonella excretion or re-excretion. To determine the influence of Salmonella carriage, fumonisins or both on digestive flora equilibrium, the use of a molecular technique CE-SSCP (Capillary-Electrophoresis Single Strand Conformation Polymorphism) appeared a good complement to the conventional bacteriological techniques. The objective was to assess the perturbation of nora associated with co-exposition in experimental conditions in absence of clinical sign

Measles Virus Infects Human Dendritic Cells and Blocks Their Allostimulatory Properties for CD4+ T Cells

Measles causes a profound immune suppression which is responsible for the high morbidity and mortality induced by secondary infections. Dendritic cells (DC) are professional antigen-presenting cells required for initiation of primary immune responses. To determine whether infection of DC by measles virus (MV) may play a role in virus-induced suppression of cell-mediated immunity, we examined the ability of CD1a+ DC derived from cord blood CD34+ progenitors and Langerhans cells isolated from human epidermis to support MV replication. Here we show that both cultured CD1a+ DC and epidermal Langerhans cells can be infected in vitro by both vaccine and wild type strains of MV. DC infection with MV resulted within 24–48 h in cell–cell fusion, cell surface expression of hemagglutinin, and virus budding associated with production of infectious virus. MV infection of DC completely abrogated the ability of the cells to stimulate the proliferation of naive allogeneic CD4+ T cell as early as day 2 of mixed leukocyte reaction (MLR) (i.e., on day 4 of DC infection). Mannose receptor–mediated endocytosis and viability studies indicated that the loss of DC stimulatory function could not be attributed to the death or apoptosis of DC. This total loss of DC stimulatory function required viral replication in the DC since ultraviolet (UV)-inactivated MV or UV-treated supernatant from MV-infected DC did not alter the allostimulatory capacity of DC. As few as 10 MV- infected DC could block the stimulatory function of 104 uninfected DC. More importantly, MV-infected DC, in which production of infectious virus was blocked by UV treatment or paraformaldehyde fixation, actively suppressed allogeneic MLR upon transfer to uninfected DC–T-cultures. Thus, the mechanisms which contribute to the loss of the allostimulatory function of DC include both virus release and active suppression mediated by MV-infected DC, independent of virus production. These data suggest that carriage of MV by DC may facilitate virus spreading to secondary lymphoid organs and that MV replication in DC may play a central role in the general immune suppression observed during measles

Aircraft Numerical "Twin": A Time Series Regression Competition

International audienceThis paper presents the design and analysis of a data science competition on a problem of time series regression from aeronautics data. For the purpose of performing predictive maintenance, aviation companies seek to create aircraft "numerical twins", which are programs capable of accurately predicting strains at strategic positions in various body parts of the aircraft. Given a number of input parameters (sensor data) recorded in sequence during the flight, the competition participants had to predict output values (gauges), also recorded sequentially during test flights, but not recorded during regular flights. The competition data included hundreds of complete flights. It was a code submission competition with complete blind testing of algorithms. The results indicate that such a problem can be effectively solved with gradient boosted trees, after preprocessing and feature engineering. Deep learning methods did not prove as efficient