Common Peptides Study of Aminoacyl-tRNA Synthetases

Aminoacyl tRNA synthetases (aaRSs) constitute an essential enzyme super-family, providing fidelity of the translation process of mRNA to proteins in living cells. They are common to all kingdoms and are of utmost importance to all organisms. It is thus of great interest to understand the evolutionary relationships among them and underline signature motifs defining their common domains.We utilized the Common Peptides (CPs) framework, based on extracted deterministic motifs from all aaRSs, to study family-specific properties. We identified novel aaRS–class related signatures that may supplement the current classification methods and provide a basis for identifying functional regions specific to each aaRS class. We exploited the space spanned by the CPs in order to identify similarities between aaRS families that are not observed using sequence alignment methods, identifying different inter-aaRS associations across different kingdom of life. We explored the evolutionary history of the aaRS families and evolutionary origins of the mitochondrial aaRSs. Lastly, we showed that prevalent CPs significantly overlap known catalytic and binding sites, suggesting that they have meaningful functional roles, as well as identifying a motif shared between aaRSs and a the Biotin-[acetyl-CoA carboxylase] synthetase (birA) enzyme overlapping binding sites in both families.The study presents the multitude of ways to exploit the CP framework in order to extract meaningful patterns from the aaRS super-family. Specific CPs, discovered in this study, may play important roles in the functionality of these enzymes. We explored the evolutionary patterns in each aaRS family and tracked remote evolutionary links between these families

Evolution of organo-clay composites with respect to thermal maturity in type II organic-rich source rocks

International audienc

3-vinyl-1,2,4-triazine as platform for conjugate addition/hetero-Diels-Alder/retro-Diels-Alder cascade reaction

National audienc

3-vinyl-1,2,4-triazine as platform for conjugate addition/hetero-Diels-Alder/retro-Diels-Alder cascade reaction

National audienc

Nanoscale Accessible Porosity as a Key Parameter Depicting the Topological Evolution of Organic Porous Networks

International audienceA significant part of the hydrocarbons contained in source rocks remains confined within the organic matter—called kerogen—from where they are generated. Understanding the sorption and transport properties of confined hydrocarbons within the kerogens is, therefore, paramount to predict production. Specifically, knowing the impact of thermal maturation on the evolution of the organic porous network is key. Here, we propose an experimental procedure to study the interplay between the chemical evolution and the structural properties of the organic porous network at the nanometer scale. First, the organic porous networks of source rock samples, covering a significant range of natural thermal maturation experienced by the Vaca Muerta formation (Neuquén Basin, Argentina), are physically reconstructed using bright-field electron tomography. Their structural description allows us to measure crucial parameters such as the porosity, specific pore volume and surface area, aperture and cavity size distributions, and constriction. In addition, a model-free computation of the topological properties (effective porosity, connectivity, and tortuosity) is conducted. Overall, we document a general increase of the specific pore volume with thermal maturation. This controls the topological features depicting increasing accessibility to alkane molecules, sensed by the evolution of the effective porosity. Collectively, our results highlight the input of bright-field electron tomography in the study of complex disordered amorphous porous media, especially to describe the interplay between the structural features and transport properties of confined fluids

Crystal-chemistry control of the mechanical properties of 2:1 clay minerals

International audienc