TRY plant trait database - enhanced coverage and open access

Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

Snow cover-related camouflage mismatch increases detection by predators

Camouflage expressed by animals is an adaptation to local environments that certain animals express to maximize survival and fitness. Animals at higher latitudes change their coat color according to a seasonally changing environment, expressing a white coat in winter and a darker coat in summer. The timing of molting is tightly linked to the appearance and disappearance of snow and is mainly regulated by photoperiod. However, due to climate change, an increasing mismatch is observed between the coat color of these species and their environment. Here, we conducted an experiment in northern Sweden, with white and brown decoys to study how camouflage (mis)-match influenced (1) predator attraction to decoys, and (2) predation events. Using camera trap data, we showed that mismatching decoys attracted more predators and experienced a higher likelihood of predation events in comparison to matching decoys, suggesting that camouflage mismatched animals experience increased detection by predators. These results provide insight into the function of a seasonal color coat and the need for this adaptation to maximize fitness in an environment that is exposed to high seasonality. Thus, our results suggest that, with increasing climate change and reduced snow cover, animals expressing a seasonal color coat will experience a decrease in survival.</p

Recreation and hunting differentially affect deer behaviour and sapling performance

Humans are increasingly acknowledged as apex predators that shape landscapes of fear to which herbivores adapt their behaviour. Here, we investigate how humans modify deer space-use and their effects on vegetation at two spatial scales; zones with different types of human use (largescale risk factor) and, nested within that, trails (fine-scale risk factor). In zones with three contrasting types of human activities: 1) no recreation, no hunting, 2) with recreation, no hunting and 3) with recreation and hunting, we linked deer space-use (dropping counts) to browsing intensity, relative growth and survival of planted saplings. Plots were located at two distances to trails (20 versus 100 m) to test how trails affect deer space-use and sapling performance. Additionally, plots were distributed over forest and heathland as risk effects are habitat-dependent. Deer space-use was highest in the zone without recreation or hunting, resulting in higher browsing levels and lower sapling growth and survival, but only in heathland. In contrast, deer space-use and sapling performance did not differ between zones with recreation only and zones with recreation and hunting. Deer dropping counts were lower near trails used for recreation, but this was not associated with browsing impact or sapling performance. Our results show that recreational use modifies deer space-use which is associated with browsing impact on woody vegetation, while seasonal hunting activities in zones with recreation did not have additive year-round effects. Yet, effects were only observed at the larger scale of recreation zones and not near trails. Furthermore, deer space-use was only associated with sapling performance in open heathland, where high visibility presumably increases avoidance behaviour because it increases detectability and decreases escape possibilities. This suggests that recreation creates behaviourally mediated cascading effects that influence vegetation development, yet these effects are context-dependent. We advocate incorporating human-induced fear effects in conservation, management and research

Recreation reduces tick density through fine-scale risk effects on deer space-use

Altered interactions between pathogens, their hosts and vectors have potential consequences for human disease risk. Notably, tick-borne pathogens, many of which are associated with growing deer abundance, show global increasing prevalence and pose increasing challenges for disease prevention. Human activities can largely affect the patterns of deer space-use and can therefore be potential management tools to alleviate human-wildlife conflicts. Here, we tested how deer space-use patterns are influenced by human recreational activities, and how this in turn affects the spatial distribution of the sheep tick (Ixodes ricinus), a relevant disease vector of zoonoses such as Lyme borrelioses. We compared deer dropping and questing tick density on transects near (20 m) and further away from(100 m) forest trails that were either frequently used (open for recreation) or infrequently used (closed for recreation, but used by park managers). In contrast to infrequently used trails, deer dropping density was 31% lower near (20 m) than further away from (100 m) frequently used trails. Similarly, ticks were 62% less abundant near (20 m) frequently used trails compared to further away from (100 m) these trails, while this decline in tick numbers was only 14% near infrequently used trails. The avoidance by deer of areas close to human-used trails was thus associated with a similar reduction in questing tick density near these trails. As tick abundance generally correlates to pathogen prevalence, the use of trails for recreation may reduce tick-borne disease risk for humans on and near these trails. Our study reveals an unexplored effect of human activities on ecosystems and how this knowledge could be potentially used to mitigate zoonotic disease risk

Recreation reduces tick density through fine-scale risk effects on deer space-use

Altered interactions between pathogens, their hosts and vectors have potential consequences for human disease risk. Notably, tick-borne pathogens, many of which are associated with growing deer abundance, show global increasing prevalence and pose increasing challenges for disease prevention. Human activities can largely affect the patterns of deer space-use and can therefore be potential management tools to alleviate human-wildlife conflicts. Here, we tested how deer space-use patterns are influenced by human recreational activities, and how this in turn affects the spatial distribution of the sheep tick (Ixodes ricinus), a relevant disease vector of zoonoses such as Lyme borrelioses. We compared deer dropping and questing tick density on transects near (20 m) and further away from (100 m) forest trails that were either frequently used (open for recreation) or infrequently used (closed for recreation, but used by park managers). In contrast to infrequently used trails, deer dropping density was 31% lower near (20 m) than further away from (100 m) frequently used trails. Similarly, ticks were 62% less abundant near (20 m) frequently used trails compared to further away from (100 m) these trails, while this decline in tick numbers was only 14% near infrequently used trails. The avoidance by deer of areas close to human-used trails was thus associated with a similar reduction in questing tick density near these trails. As tick abundance generally correlates to pathogen prevalence, the use of trails for recreation may reduce tick-borne disease risk for humans on and near these trails. Our study reveals an unexplored effect of human activities on ecosystems and how this knowledge could be potentially used to mitigate zoonotic disease risk

Hunting as land use: Understanding the spatial associations among hunting, agriculture, and forestry

Hunting is a widespread but often overlooked land-use activity, providing major benefits to society. Hunting takes place in most landscapes, yet it remains unclear which types of landscapes foster or dampen hunting-related services, and how hunting relates to other land uses. A better understanding of these relationships is key for sustainable land-use planning that integrates wildlife management. This is particularly urgent for Europe, where wildlife populations are increasing. Focusing on Sweden, we explored the spatial associations among hunting, agriculture, and forestry to identify archetypical combinations of these land uses. Specifically, we combined indicators on the extent and intensity of agriculture and forestry, with data on hunting bags for 63 game species using self-organizing maps, a non-parametric clustering approach. We identified 15 typical bundles of co-occurring land uses at the municipality level across Sweden. The harvest of forest grouse, bears, and moose co-occurred with forestry in northern Sweden, whereas the harvest of small game, different deer species, and wild boar co-occurred with agriculture across southern Sweden, reflecting species’ biology, environmental factors, and management. Our findings also highlight the strength of associations among hunting and other land uses. Importantly, we identified large areas in central Sweden where harvest of game was below average, possibly indicating that intensity of hunting is out of balance with that of agriculture or forestry, potentially fostering conflict between wildlife and land use. Collectively, our results suggest that (1) hunting should be considered a major land use that, in Sweden, is more widespread than agriculture and forestry; (2) land-use planning must therefore integrate wildlife management; and (3) such an integration should occur in a regionalized manner that considers social-ecological context. Our approach identifies a first spatial template within which such context-specific land-use planning, aiming at aligning wildlife and diverse land uses, can take place

Seasonal variation in the relative dominance of herbivore guilds in an African savanna

African savannas are highly seasonal with a diverse array of both mammalian and invertebrate herbivores, yet herbivory studies have focused almost exclusively on mammals. We conducted a 2-yr exclosure experiment in South Africa's Kruger National Park to measure the relative impact of these two groups of herbivores on grass removal at both highly productive patches (termite mounds) and in the less productive savanna matrix. Invertebrate and mammalian herbivory was greater on termite mounds, but the relative importance of each group changed over time. Mammalian offtake was higher than invertebrates in the dry season, but can be eclipsed by invertebrates during the wet season when this group is more active. Our results demonstrate that invertebrates play a substantial role in savanna herbivory and should not be disregarded in attempts to understand the impacts of herbivory on ecosystems

Long-term frequent fires do not decrease topsoil carbon and nitrogen in an Afromontane grassland

Fire has been an integral evolutionary force shaping and maintaining grassy biomes, such as the Afromontane grasslands of South Africa. Afromontane grasslands represent a large carbon reservoir, but it is uncertain how fire affects their long-term C storage. We investigated the effect of fire regime on soil organic C and N (SOC; SON) in a long-term (39-year) burning experiment in the Maloti-Drakensberg Park, South Africa. We compared SOC and SON sampled in 2004 and 2019 from six treatments differing in fire frequency (annual, biennial, five-year, infrequent) and season (spring, autumn). Average SOC increased significantly between 2004 and 2019. Average SON increased slightly, resulting in a significant increase in C:N ratio, indicating that soil organic matter is becoming less N-eutrophic. Importantly, burning annually in spring increased SOC and SON. This unexpected response is attributed to the aluandic (acidic, high organic matter) properties of Drakensberg soils. Burning in autumn did not increase SOC and SON. The lowest C stocks were observed in infrequently burnt plots. Average C sequestration across all fire treatments was 0.30 Mg ha(-1) y(-1). The observed increase in SOC under frequent fires is contrary to many findings from other studies in grassy ecosystems and notably driven by fire season

The relative role of intrinsic and extrinsic drivers in regulating population change and survival of African wild dogs (Lycaon pictus)

DATA AVAILABILITY : The datasets generated during and/or analysed during the current study are available in the figshare repository https://doi.org/10.6084/m9.figshare.14368043.v1.CODE AVAILABILITY : The code generated during and/or analysed during the current study are available in the figshare repository https://doi.org/10.6084/m9.figshare.14368043.v1.Evaluating how intrinsic (intraspecific density), extrinsic (interspecific density and prey density) and anthropogenic (management intervention) factors affect African wild dog (Lycaon pictus) population performance is key to implementing effective conservation strategies. Lions (Panthera leo) can affect wild dog populations, and in small and highly managed protected areas, populations of wild dogs and lions often co-occur at high densities. It is unknown what mediates these co-occurring high densities and how trophic interactions facilitate the persistence of wild dogs in areas with high lion densities. In this study, we modelled how intrinsic and extrinsic factors affected population change and survival of 590 individually identifiable wild dogs in Hluhluwe–iMfolozi Park (HiP), South Africa, an area with high lion density. The wild dog population in HiP grew significantly and comprised one of the highest population densities and the largest pack sizes in Africa. Pup survival rate was also the highest known in Africa, and the median individual survival was 29 months. During low lion density periods, the rate of wild dog population change increased despite low prey density, while at higher lion density, the rate of population change decreased only when prey density decreased. Survival for all age classes increased as population density increased, suggesting there is an important density-dependent effect on survival for all age classes that manifests at the population level. While increasing lion density had negative effects on adult and yearling survival, it did not affect pup survival. Our results suggest that both intrinsic and extrinsic drivers regulated the HiP wild dog population. Importantly, populations of wild dogs in small (~ 900 km2), fenced protected areas are highly adaptable and can co-exist at high levels of interspecific competition over many generations as long as there is an intact and abundant prey base.The National Research Foundation of South Africa Scarce Skills Development Fund; the Rufford Small Grants Foundation; the Endangered Wildlife Trust (South Africa); the Wildlife ACT Fund (South Africa) and the Claude Leon Foundation.https://link.springer.com/journal/429912023-09-06hj2023Mammal Research InstituteZoology and Entomolog

The ERCC1/XPF endonuclease is required for efficient single-strand annealing and gene conversion in mammalian cells

The mammalian ERCC1-XPF endonuclease has a suggested role in the repair of DNA double-strand breaks (DSB) by single-strand annealing (SSA). Here, we investigated the role of ERCC1 in homologous recombination in mammalian cells, and confirm a role of ERCC1 in SSA. Interestingly, we also report an unexpected role for ERCC1 in gene conversion. This provides support that gene conversion in mammalian somatic cells is carried out through synthesis-dependent strand annealing, rather than through a double Holliday Junction mechanism. Moreover, we find low frequencies of SSA and gene conversion in G1-arrested cells, suggesting that SSA is not a frequent DSB repair pathway in G1-arrested mammalian cells, even in the presence of perfect repeats. Furthermore, we find that SSA is not influenced by inhibition of CDK2 (using Roscovitine), ATM (using Caffeine and KU55933), Chk1 (using CEP-3891) or DNA-PK (using NU7026)