The Neural Representation Benchmark and its Evaluation on Brain and Machine

A key requirement for the development of effective learning representations is their evaluation and comparison to representations we know to be effective. In natural sensory domains, the community has viewed the brain as a source of inspiration and as an implicit benchmark for success. However, it has not been possible to directly test representational learning algorithms directly against the representations contained in neural systems. Here, we propose a new benchmark for visual representations on which we have directly tested the neural representation in multiple visual cortical areas in macaque (utilizing data from [Majaj et al., 2012]), and on which any computer vision algorithm that produces a feature space can be tested. The benchmark measures the effectiveness of the neural or machine representation by computing the classification loss on the ordered eigendecomposition of a kernel matrix [Montavon et al., 2011]. In our analysis we find that the neural representation in visual area IT is superior to visual area V4. In our analysis of representational learning algorithms, we find that three-layer models approach the representational performance of V4 and the algorithm in [Le et al., 2012] surpasses the performance of V4. Impressively, we find that a recent supervised algorithm [Krizhevsky et al., 2012] achieves performance comparable to that of IT for an intermediate level of image variation difficulty, and surpasses IT at a higher difficulty level. We believe this result represents a major milestone: it is the first learning algorithm we have found that exceeds our current estimate of IT representation performance. We hope that this benchmark will assist the community in matching the representational performance of visual cortex and will serve as an initial rallying point for further correspondence between representations derived in brains and machines.Comment: The v1 version contained incorrectly computed kernel analysis curves and KA-AUC values for V4, IT, and the HT-L3 models. They have been corrected in this versio

Deep Neural Networks Rival the Representation of Primate IT Cortex for Core Visual Object Recognition

The primate visual system achieves remarkable visual object recognition performance even in brief presentations and under changes to object exemplar, geometric transformations, and background variation (a.k.a. core visual object recognition). This remarkable performance is mediated by the representation formed in inferior temporal (IT) cortex. In parallel, recent advances in machine learning have led to ever higher performing models of object recognition using artificial deep neural networks (DNNs). It remains unclear, however, whether the representational performance of DNNs rivals that of the brain. To accurately produce such a comparison, a major difficulty has been a unifying metric that accounts for experimental limitations such as the amount of noise, the number of neural recording sites, and the number trials, and computational limitations such as the complexity of the decoding classifier and the number of classifier training examples. In this work we perform a direct comparison that corrects for these experimental limitations and computational considerations. As part of our methodology, we propose an extension of "kernel analysis" that measures the generalization accuracy as a function of representational complexity. Our evaluations show that, unlike previous bio-inspired models, the latest DNNs rival the representational performance of IT cortex on this visual object recognition task. Furthermore, we show that models that perform well on measures of representational performance also perform well on measures of representational similarity to IT and on measures of predicting individual IT multi-unit responses. Whether these DNNs rely on computational mechanisms similar to the primate visual system is yet to be determined, but, unlike all previous bio-inspired models, that possibility cannot be ruled out merely on representational performance grounds.Comment: 35 pages, 12 figures, extends and expands upon arXiv:1301.353

Longitudinal Intra- and Inter-individual variation in T-cell subsets of HIV-infected and uninfected men participating in the LA Multi-Center AIDS Cohort Study.

To assess the intra-individual and inter-individuals biological variation and the effect of aging on lymphocyte T-cells subsets.We assessed lymphocyte phenotypes (CD3, CD4, and CD8 T-cells) in 89 HIV-1-infected and 88 uninfected white non-Hispanic men every 6 months, to examine the biological variation for those measurements, and the average change in lymphocyte phenotype over 34 years.The markers showed significant intra-individuality in HIV-infected and uninfected individuals with index of individuality of <1.4. No mean changes were seen over the 34 years, with the exception of percentage CD4T-cells in HIV-uninfected individuals.In the pre-HAART era, HIV-infected individuals experienced an increase in mean absolute CD3 T-cell numbers (11.21 cells/μL, P = 0.02) and absolute CD8 T-cell numbers (34.57 cell/μl, P < .001), and in the percentage of CD8 T-cells (1.45%, P < .001) per year and a significant decrease in mean absolute CD4 T-cell numbers (23.68 cells/μl, P < .001) and in the percentage of CD4 T-cells (1.49%, P < .001) per year.In the post-HAART era, no changes in mean levels were observed in absolute CD3 T-cell count (P = .15) or percentage (P = .99). Significant decreases were seen in mean count (8.56 cells/μl, P < .001) and percentage (0.59%, P < .001) of CD8 T-cells, and increases in mean absolute count (10.72 cells/μl, P < .001) and percentage (0.47%, P < .001) of CD4 T-cells.With the exception of CD4 (%), no average changes per year were seen in lymphocyte phenotype of HIV-uninfected men. The results of coefficients of variation of intra and inter-individuals of this study can be useful for HIV-1 infection monitoring and in addition the observation could be a useful guide for intra- and inter-individual coefficient variations, and establishing quality goal studies of different blood biomarkers in healthy and other diseases

Епоха "пост": людина в перспективі "нової духовності"

Розглянуто основні проблеми сучасного суспільства, пов’язані із антропологічною кризою, кардинальними змінами у темпоральності, способі буття людини. Проаналізовано ситуацію заміни попередніх гуманістичних ціннісних систем на більш “технізовані”, що призводить до виникнення нового типу людини – “постлюдини”. Посилюється вплив на людей “світу віртуальної реальності”. Нове штучне середовище “сканує”, приймає лише інформаційний аспект людини, вводячи її як цілісну істоту в стан кризи. Доведено актуальність відповідей на смислові запитання епохи, пов’язані із світоглядом, духовністю та цінностями.The main problems of modern society, related to the anthropological crisis, fundamental changes in temporality, ways of human being are considered. There is an analysis of situation of replacing the previous humanistic value systems on a more “technicized”, which causes a new type of man – “posthuman”. The impact on “the world of virtual reality” people is growing. New artifi cial environment “scans”, takes only informational aspect of human, introducing it as complete being in a state of crisis. The urgency of responses to semantic question of the epoch, related to the outlook, spirituality and values is justifi ed

The metabolic syndrome is not associated with homocysteinemia: The Persian Gulf Healthy Heart Study

Background: It is uncertain whether homocysteine and the metabolic syndrome or its components are related in the general population, as studies investigating the association between homocysteine levels and insulin resistance have shown conflicting results. Methods: In an ancillary study to the Persian Gulf Healthy Heart Study, a cohort study of Iranian men and women aged ≥25 yr, a random sample of 1754 subjects were evaluated for the association of plasma homocysteine levels and the metabolic syndrome using National Cholesterol Education Program (NCEP)-Adult Treatment Panel (ATP)-III criteria. Total homocysteine levels and high sensitivity C-reactive protein (CRP) were determined by enzyme-linked immunosorbent assays. Results: Subjects with lower HDL-cholesterol and higher blood pressure showed significantly higher homocysteine levels (p=0.001 and p<0.0001; respectively). There was no significant difference in serum levels of homocysteine between subjects with and without the metabolic syndrome. In multiple logistic regression analysis, the metabolic syndrome did not show a significant association with serum homocysteine levels after adjusting for sex, age, smoking, fruit and vegetable intake pattern, body mass index, and physical inactivity. Concurrent elevated CRP levels and the metabolic syndrome also did not show a significant association with serum homocysteine levels after adjusting for sex, age, and lifestyle cardiovascular risk factors. Conclusions: There was no association between the metabolic syndrome using NCEP-ATPIII criteria and homocysteinemia in this study. These data refute the hypothesis that homocysteine levels are influenced by the metabolic syndrome, at least in general healthy population

Sisi Gelap Demokrasi: Kekerasan Masyarakat Madani di Indonesia

Salah satu capaian penting reformasi di Indonesia adalah tumbuhnya masyarakat madani (civil society) yang kuat. Namun, beberapa di antara organisasi masyarakat madani yang paling efektif dewasa ini justru adalah kelompok-kelompok Islamis garis-keras yang mendakwahkan intoleransi dan menyebarluaskan kebencian. Di beberapa wilayah, seperti Jawa Barat dan seputar Jakarta, organisasi-organisasi ini terbukti amat memengaruhi agenda kebijakan publik, dengan mendesak pemerintah—baik di tingkat lokal maupun nasional—untuk menerapkan pandangan mereka mengenai moralitas dan pemahaman mereka mengenai ortodoksi. Meskipun mengusung agenda-agenda yang antidemokrasi, semua organisasi di atas justru memanfaatkan ruang-ruang bebas yang disediakan demokrasi. Pertanyaannya, apakah organisasi-organisasi itu tumbuh berjalan seiring dengan meningkatnya konservatisme sosial masyakarat Indonesia, atau karena koneksi-koneksi politik tingkat tinggi yang kuat? Mengapa mereka tampak lebih efektif dalam advokasi mereka dibanding organisasi-organisasi lainnya? Bagaimana demokrasi mengatasi kekuatan-kekuatan anti-demokrasi yang menggerogotinya itu? Bermula dari Nurcholish Madjid Memorial Lecture (NMML) VII (2013), di buku ini Sidney Jones menjawab pertanyaan-pertanyaan di atas dari perspektif teori gerakan sosial. Dia juga mengevaluasi berbagai tawaran yang sudah diajukan untuk “mengatasi” organisasi-organisasi di atas dan memperkuat pluralisme seperti yang pernah disuarakan almarhum Nurcholish Madjid. Aspek-aspek tersebut dibahas lebih lanjut dari berbagai sudut pandang oleh para penanggapnya: Elga Sarapung, M. Najib Azca, Jeremy Menchik, Sana Jaffrey, Titik Firawati, dan Zainal Abidin Bagir. Semuanya menyajikan persoalan dan tantangan yang tidak mudah, namun tetap menjaga harapan akan Perubahan dan perbaikan demokrasi dan masyarakat madani. Buku ini perlu dibaca oleh para pengambil kebijakan, akademisi, aktivis sosial dan siapa pun yang merasa peduli dengan masa depan demokrasi Indonesia

Reducing bias in open-label trials where blinded outcome assessment is not feasible: strategies from two randomised trials

Background Blinded outcome assessment is recommended in open-label trials to reduce bias, however it is not always feasible. It is therefore important to find other means of reducing bias in these scenarios. Methods We describe two randomised trials where blinded outcome assessment was not possible, and discuss the strategies used to reduce the possibility of bias. Results TRIGGER was an open-label cluster randomised trial whose primary outcome was further bleeding. Because of the cluster randomisation, all researchers in a hospital were aware of treatment allocation and so could not perform a blinded assessment. A blinded adjudication committee was also not feasible as it was impossible to compile relevant information to send to the committee in a blinded manner. Therefore, the definition of further bleeding was modified to exclude subjective aspects (such as whether symptoms like vomiting blood were severe enough to indicate the outcome had been met), leaving only objective aspects (the presence versus absence of active bleeding in the upper gastrointestinal tract confirmed by an internal examination). TAPPS was an open-label trial whose primary outcome was whether the patient was referred for a pleural drainage procedure. Allowing a blinded assessor to decide whether to refer the patient for a procedure was not feasible as many clinicians may be reluctant to enrol patients into the trial if they cannot be involved in their care during follow-up. Assessment by an adjudication committee was not possible, as the outcome either occurred or did not. Therefore, the decision pathway for procedure referral was modified. If a chest x-ray indicated that more than a third of the pleural space filled with fluid, the patient could be referred for a procedure; otherwise, the unblinded clinician was required to reach a consensus on referral with a blinded assessor. This process allowed the unblinded clinician to be involved in the patient’s care, while reducing the potential for bias. Conclusions When blinded outcome assessment is not possible, it may be useful to modify the outcome definition or method of assessment to reduce the risk of bias