Genetic variability of muscle biological characteristics of young Limousin bulls

Genetic parameters of 4 muscle biological characteristics (protein to DNA ratio (Pro/DNA), lactate dehydrogenase (LDH) activity, isocitrate dehydrogenase (ICDH) activity and the proportion of type I myosin heavy chains (MHC I)), in the Semitendinosus and the Longissimus thoracis, were estimated simultaneously with average daily gain (ADG), 480-d final weight (FW), carcass lean and fat contents (CL% and CF% respectively) in a sample of young Limousin bulls tested in station. The data came from 144 animals, the progeny of 15 sires. Sire and residual variances and covariances were estimated u using an expectation maximization restricted maximum likelihood (EM-REML) procedure applied to a multitrait mixed model. Heritability coefficients of production traits, ADG, FW, CL% and CF%, were 0.19, 0.49, 0.39 and 0.43, respectively, while heritability coefficients of muscle characteristics, Pro/DNA, LDH, ICDH and MHC I, were 0.11, 0.26, 1.03 and 0.35 respectively, in the Semitendinosus muscle and 0.29, 0.31, 0.28 and 0.41, respectively, in the Longissimus thoracis muscle. In both muscles, the oxidative activity of the ICDH appeared to be genetically associated with the proportion of type I myosin heavy chains and opposed to the glycolytic activity of the LDH. The LDH activity was clearly associated with higher muscle-to-fat ratio, while the opposite relationship was observed between that ratio and the ICDH activity or the MHC I proportion.Les paramètres génétiques de 4 caractéristiques biologiques - le rapport protéines /ADN (Pro/DNA), les activités de la lactate déshydrogénase (LDH) et de l’isocitrate déshydrogénase (ICDH) et la proportion en chaînes lourdes de myosine lente (MHC I) - des muscles Semitendinosus et Longissimus thoracis, et ceux du gain moyen quotidien (ADG), du poids vif finaL à 480 j (FW) et des teneurs de la carcasse en muscles et en dépôts adipeux (CL% and CF% respectivement), ont été estimés simultanément à partir d’un échantillon de taurillons Limousins contrôlés en station. Le fichier comprenait 144 veaux issus de 15 pères testés sur descendance. Les variances et covariances paternelles et résiduelles ont été estimées par la méthode du maximum de vraisemblance restreinte, avec l’algorithme d’espérance-maximisation, appliquée à un modèle mixte multicaractère (EM-REML). Les coefficients d’héritabilité des variables de production, ADG, FW, CL% et CF%, s’élevaient respectivement à 0,19, 0,49, 0,39 et 0,43, tandis que les coefficients d’héritabilité des caractéristiques musculaires, Pro/DNA, LDH, ICDH et MHC I, valaient respectivement 0,11, 0,26, 1,03 et 0,35 dans le muscle Semitendinosus et 0,29, 0,31, 0,28 et 0,41 dans le muscle Longissimus thoracis. Dans les 2 muscles, l’activité oxidative de l’ICDH était génétiquement associée à la proportion de myosine lente et opposée à l’activité glycolytique du LDH. Cette activité du LDH était positivement corrélée avec le rapport muscles / dépôts adipeux, alors qu’une relation inverse était observée avec l’activité de l’ICDH et la proportion de MHC I

On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models

A finite-context (Markov) model of order yields the probability distribution of the next symbol in a sequence of symbols, given the recent past up to depth . Markov modeling has long been applied to DNA sequences, for example to find gene-coding regions. With the first studies came the discovery that DNA sequences are non-stationary: distinct regions require distinct model orders. Since then, Markov and hidden Markov models have been extensively used to describe the gene structure of prokaryotes and eukaryotes. However, to our knowledge, a comprehensive study about the potential of Markov models to describe complete genomes is still lacking. We address this gap in this paper. Our approach relies on (i) multiple competing Markov models of different orders (ii) careful programming techniques that allow orders as large as sixteen (iii) adequate inverted repeat handling (iv) probability estimates suited to the wide range of context depths used. To measure how well a model fits the data at a particular position in the sequence we use the negative logarithm of the probability estimate at that position. The measure yields information profiles of the sequence, which are of independent interest. The average over the entire sequence, which amounts to the average number of bits per base needed to describe the sequence, is used as a global performance measure. Our main conclusion is that, from the probabilistic or information theoretic point of view and according to this performance measure, multiple competing Markov models explain entire genomes almost as well or even better than state-of-the-art DNA compression methods, such as XM, which rely on very different statistical models. This is surprising, because Markov models are local (short-range), contrasting with the statistical models underlying other methods, where the extensive data repetitions in DNA sequences is explored, and therefore have a non-local character

Macro mineral requirements by grazing zebu bovines

The objective of this study was to determine requirements of calcium (Ca), phosphorus (P), magnesium (Mg), potassium (K) and sodium (Na) for grazing zebu bovines. The experiment area was composed of Brachiaria decumbens paddocks. Twenty-seven non-castrated animals, with initial live weight of 311.0 kg and at an average age of 14 months were used. Three animals were slaughtered, after adaptation period, so they were used as control for estimates of empty body weight and initial body composition of animals in the experiment. Out of the 24 remaining animals, four were sent to the maintenance group with restrict grazing time to limit energy intake close to the maintenance level. The other 20 animals were distributed in four treatments: mineral mixture, self-control intake and three-times-a-week-offer frequency (offered on Mondays, Wednesdays and Fridays) and daily. Concentrations of all studied macro elements in empty body and empty body gain decreased as live weight increased. The ratios obtained for g Ca/100 g of retained protein and g P/100 g of retained protein were 9.18 and 4.72, respectively. Total dietary requirement of calcium was lower than the one recommended by NRC (2000), but P requirement was very close to that

Muscle cells of sporadic amyotrophic lateral sclerosis patients secrete neurotoxic vesicles

Background: The cause of the motor neuron (MN) death that drives terminal pathology in amyotrophic lateral sclerosis (ALS) remains unknown, and it is thought that the cellular environment of the MN may play a key role in MN survival. Several lines of evidence implicate vesicles in ALS, including that extracellular vesicles may carry toxic elements from astrocytes towards MNs, and that pathological proteins have been identified in circulating extracellular vesicles of sporadic ALS patients. Because MN degeneration at the neuromuscular junction is a feature of ALS, and muscle is a vesicle-secretory tissue, we hypothesized that muscle vesicles may be involved in ALS pathology. Methods: Sporadic ALS patients were confirmed to be ALS according to El Escorial criteria and were genotyped to test for classic gene mutations associated with ALS, and physical function was assessed using the ALSFRS-R score. Muscle biopsies of either mildly affected deltoids of ALS patients (n = 27) or deltoids of aged-matched healthy subjects (n = 30) were used for extraction of muscle stem cells, to perform immunohistology, or for electron microscopy. Muscle stem cells were characterized by immunostaining, RT-qPCR, and transcriptomic analysis. Secreted muscle vesicles were characterized by proteomic analysis, Western blot, NanoSight, and electron microscopy. The effects of muscle vesicles isolated from the culture medium of ALS and healthy myotubes were tested on healthy human-derived iPSC MNs and on healthy human myotubes, with untreated cells used as controls. Results: An accumulation of multivesicular bodies was observed in muscle biopsies of sporadic ALS patients by immunostaining and electron microscopy. Study of muscle biopsies and biopsy-derived denervation-naïve differentiated muscle stem cells (myotubes) revealed a consistent disease signature in ALS myotubes, including intracellular accumulation of exosome-like vesicles and disruption of RNA-processing. Compared with vesicles from healthy control myotubes, when administered to healthy MNs the vesicles of ALS myotubes induced shortened, less branched neurites, cell death, and disrupted localization of RNA and RNA-processing proteins. The RNA-processing protein FUS and a majority of its binding partners were present in ALS muscle vesicles, and toxicity was dependent on the expression level of FUS in recipient cells. Toxicity to recipient MNs was abolished by anti-CD63 immuno-blocking of vesicle uptake. Conclusions: ALS muscle vesicles are shown to be toxic to MNs, which establishes the skeletal muscle as a potential source of vesicle-mediated toxicity in ALS

Carcass characteristics of feedlot-finished Zebu and Caracu cattle

This study analyzes the chemical carcass characteristics and carcass losses in 86 cattle, both castrated and non-castrated, with an average initial weight of 329 kg and an average age of approximately 20 months, including 12 Gyr, 20 Guzerat, 20 Nellore, and 20 Caracu among the herds selected for weight determination at 378 days of age, as well as 14 Nellore cattle that were not selected. The diet contained a roughage-to-concentrate ratio of 60:40 in terms of dry matter (DM), with 14.8% crude protein as a percentage of DM and corn silage as roughage. A completely randomized 5 × 2 factorial experimental design was used, including five breeds and two sex classes. The following values were determined: losses due to the trimming of commercial cuts and cooking; shear force; the temperature and pH of the meat; and the chemical composition of the Hankins and Howe section (HH section). The castrated animals exhibited greater losses from the front trimmings compared with the non-castrated cattle. There were no differences in the final pH values of the carcasses among the breeds, although the noncastrated animals exhibited higher values than the castrated ones, likely because non-castrated animals were more susceptible to stress. The final pH remained within the range considered optimal for all of the carcasses studied. No differences were observed in the shear force among the breeds or between the two sexes. When appropriately managed, zebu breeds are capable of producing tender meat, thus meeting the demands of the consumer market

Desempenho e composição corporal de novilhas alimentadas com dois níveis de concentrado e bagaço de cana submetidos a diferentes processos de hidrólise

O objetivo deste trabalho foi testar duas formas de hidrólise do bagaço de cana (com [17kgf/cm²]e sem [4kgf/cm²] rápida descompressão pós-hidrólise) e dois níveis de concentrado (25 e 45% MS) no desempenho e na composição corporal de novilhas em crescimento sob regime confinado durante 112 dias. Vinte e quatro novilhas Nelore e 12 Canchim foram distribuídas em delineamento de blocos casualizados em arranjo fatorial 2x2. Os resultados demonstraram que a omissão da explosão pós-hidrólise e o uso de níveis mais elevados de concentrado aumentaram o ganho de peso e o consumo de alimentos. Os resultados para ganho de peso e consumo de matéria seca, respectivamente, para tratamento sem vs com descompressão e 45 vs 25% de concentrado, foram 0,76 vs 0,67 e 0,76 vs 0,66 kg/d e 6,7 vs 5,8 e 6,8 vs 5,7 kg/dia. Entretanto, não houve diferença entre os tratamentos para conversão alimentar. Não foram observadas diferenças entre os tratamentos quanto à composição corporal determinada por meio do espaço de deutério ao final do período de confinamento, embora a taxa estimada de deposição de lipídios tenha sido maior para o tratamento sem explosão (216 vs 175 g/d) e o tratamento com 45% de concentrado (225 vs 166 g/d). Não foram observadas vantagens na descompressão rápida pós-hidrólise em alta pressão na eficiência de conversão de alimentos. Os resultados demonstram que animais alimentados com bagaço hidrolisado em níveis altos de ingestão (2,9% PV) e proporções baixas de concentrado apresentaram eficiência de utilização da dieta semelhante a dietas com níveis mais altos de concentrado.The objective of this work was to test two forms of hydrolysis of sugarcane bagasse (with [17 kgf/cm²] or without [4 kgf/cm²] fast decompression post-hydrolysis) and two levels of concentrate (25 and 45%. DM) on the performance and final body composition of growing heifers in a 112 day feedlot period. Twenty-four Nellore and 12 Canchim heifers were allotted to a randomized block design in a 2x2 factorial arrangement. The results demonstrated that the omission of decompression post hydrolysis and the use of higher levels of concentrate increased daily gain and feed intake. The results for weight gain and dry matter intake, for treatment without vs with decompression and with 45 vs 25% of concentrate, were, respectively, .76 vs .67 and .76 vs .66 kg/d and 6.7 vs 5.8 and 6.8 vs 5.7 kg/d. However, there was no difference among treatments for feed:gain ratio. No differences were observed among treatments for body composition determined by deuterium dilution at the end of the feedlot period, although the estimated rate of lipid deposition was higher for the treatment without fast decompression (216 vs 175 g/d) and the treatment with 45% concentrate (225 vs 166 g/d). No advantage was observed in the fast decompression post-hydrolysis at high pressure on the efficiency of feed:gain ratio of the feeds. The results demonstrated that animals fed hydrolyzed bagasse at high levels of intake (2.9% LW) and lower proportions of concentrate presented an efficiency of feed utilization similar to the diets with higher levels of concentrate.USP ESALQ Dept. ZootecniaUNESPEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Cornell University Dept. Animal ScienceUSP FZEA Dept. ZootecniaRowett Research InstituteUNES