Living on the edge: utilising lidar data to assess the importance of vegetation structure for avian diversity in fragmented woodlands and their edges

Context: In agricultural landscapes, small woodland patches can be important wildlife refuges. Their value in maintaining biodiversity may, however, be compromised by isolation, and so knowledge about the role of habitat structure is vital to understand the drivers of diversity. This study examined how avian diversity and abundance were related to habitat structure in four small woods in an agricultural landscape in eastern England. Objectives: The aims were to examine the edge effect on bird diversity and abundance, and the contributory role of vegetation structure. Specifically: what is the role of vegetation structure on edge effects, and which edge structures support the greatest bird diversity? Methods: Annual breeding bird census data for 28 species were combined with airborne lidar data in linear mixed models fitted separately at (i) the whole wood level, and (ii) for the woodland edges only. Results: Despite relatively small woodland areas (4.9–9.4 ha), bird diversity increased significantly towards the edges, being driven in part by vegetation structure. At the whole woods level, diversity was positively associated with increased vegetation above 0.5 m and especially with increasing vegetation density in the understorey layer, which was more abundant at the woodland edges. Diversity along the edges was largely driven by the density of vegetation below 4 m. Conclusions: The results demonstrate that bird diversity was maximised by a diverse vegetation structure across the wood and especially a dense understorey along the edge. These findings can assist bird conservation by guiding habitat management of remaining woodland patches

Joint modeling of covariates and censoring process assuming non-constant dropout hazard

In this manuscript we propose a novel approach for the analysis of longitudinal data that have informative dropout. We jointly model the slopes of covariates of interest and the censoring process for which we assume a survival model with logistic non-constant dropout hazard in a likelihood function that is integrated over the random effects. Maximization of the marginal likelihood function results in acquiring maximum likelihood estimates for the population slopes and empirical Bayes estimates for the individual slopes that are predicted using Gaussian quadrature. Our simulation study results indicated that the performance of this model is superior in terms of accuracy and validity of the estimates compared to other models such as logistic non-constant hazard censoring model that does not include covariates, logistic constant censoring model with covariates, bootstrapping approach as well as mixed models. Sensitivity analyses for the dropout hazard and non-Gaussian errors were also undertaken to assess robustness of the proposed approach to such violations. Our model was illustrated using a cohort of renal transplant patients with estimated glomerular filtration rate as the outcome of interest