Matrix isolation study of the photolysis of cyanogen azide. The infrared and ultraviolet spectra of the free radical NCN

Infrared and ultraviolet absorption spectra of free radical in photolysis of cyanogen azid

Matrix isolation study of the reaction of f atoms with co infrared and ultraviolet spectrum of the free radical fco

Matrix isolation of reaction of fluorine atoms with carbon monoxide - infrared and ultraviolet spectrum of free radical fluorocarbon monoxid

Identification of H2_2CCC as a diffuse interstellar band carrier

We present strong evidence that the broad, diffuse interstellar bands (DIBs) at 4881 and 5450\,\AA are caused by the $B\,^1$B$_1$\,$\leftarrow$\,$X\,^1$A$_1$ transition of H$_2$CCC (l-C$_3$H$_2$). The large widths of the bands are due to the short lifetime of the $B\,^1$B$_1$ electronic state. The bands are predicted from absorption measurements in a neon matrix and observed by cavity ring-down in the gas phase and show exact matches to the profiles and wavelengths of the two broad DIBs. The strength of the 5450\,\AA DIB leads to a l-C$_3$H$_2$ column density of $\sim5\times10^{14}$ cm$^{-2}$ towards HD\,183143 and $\sim2\times10^{14}$\,cm$^{-2}$ to HD\,206267. Despite similar values of $E$($B-V$), the 4881 and 5450\,\AA DIBs in HD\,204827 are less than one third their strength in HD\,183143, while the column density of interstellar C$_3$ is unusually high for HD\,204827 but undetectable for HD\,183143. This can be understood if C$_3$ has been depleted by hydrogenation to species such as l-C$_3$H$_2$ towards HD\,183143. There are also three rotationally resolved sets of triplets of l-C$_3$H$_2$ in the 6150$-$6330\,\AA region. Simulations, based on the derived spectroscopic constants and convolved with the expected instrumental and interstellar line broadening, show credible coincidences with sharp, weak DIBs for the two observable sets of triplets. The region of the third set is too obscured by the $\alpha$-band of telluric O$_2$.Comment: 22 pages, 9 figure

Bacterial microevolution and the Pangenome

The comparison of multiple genome sequences sampled from a bacterial population reveals considerable diversity in both the core and the accessory parts of the pangenome. This diversity can be analysed in terms of microevolutionary events that took place since the genomes shared a common ancestor, especially deletion, duplication, and recombination. We review the basic modelling ingredients used implicitly or explicitly when performing such a pangenome analysis. In particular, we describe a basic neutral phylogenetic framework of bacterial pangenome microevolution, which is not incompatible with evaluating the role of natural selection. We survey the different ways in which pangenome data is summarised in order to be included in microevolutionary models, as well as the main methodological approaches that have been proposed to reconstruct pangenome microevolutionary history

Mouth development

A mouth is present in all animals, and comprises an opening from the outside into the oral cavity and the beginnings of the digestive tract to allow eating. This review focuses on the earliest steps in mouth formation. In the first half, we conclude that the mouth arose once during evolution. In all animals, the mouth forms from ectoderm and endoderm. A direct association of oral ectoderm and digestive endoderm is present even in triploblastic animals, and in chordates, this region is known as the extreme anterior domain (EAD). Further support for a single origin of the mouth is a conserved set of genes that form a 'mouth gene program' including foxA and otx2. In the second half of this review, we discuss steps involved in vertebrate mouth formation, using the frog Xenopus as a model. The vertebrate mouth derives from oral ectoderm from the anterior neural ridge, pharyngeal endoderm and cranial neural crest (NC). Vertebrates form a mouth by breaking through the body covering in a precise sequence including specification of EAD ectoderm and endoderm as well as NC, formation of a 'pre-mouth array,' basement membrane dissolution, stomodeum formation, and buccopharyngeal membrane perforation. In Xenopus, the EAD is also a craniofacial organizer that guides NC, while reciprocally, the NC signals to the EAD to elicit its morphogenesis into a pre-mouth array. Human mouth anomalies are prevalent and are affected by genetic and environmental factors, with understanding guided in part by use of animal models. WIREs Dev Biol 2017, 6:e275. doi: 10.1002/wdev.275 For further resources related to this article, please visit the WIREs website

Beyond representing orthology relations by trees

Reconstructing the evolutionary past of a family of genes is an important aspect of many genomic studies. To help with this, simple relations on a set of sequences called orthology relations may be employed. In addition to being interesting from a practical point of view they are also attractive from a theoretical perspective in that e.\,g.\,a characterization is known for when such a relation is representable by a certain type of phylogenetic tree. For an orthology relation inferred from real biological data it is however generally too much to hope for that it satisfies that characterization. Rather than trying to correct the data in some way or another which has its own drawbacks, as an alternative, we propose to represent an orthology relation $\delta$ in terms of a structure more general than a phylogenetic tree called a phylogenetic network. To compute such a network in the form of a level-1 representation for $\delta$, we formalize an orthology relation in terms of the novel concept of a symbolic 3- dissimilarity which is motivated by the biological concept of a ``cluster of orthologous groups'', or COG for short. For such maps which assign symbols rather that real values to elements, we introduce the novel {\sc Network-Popping} algorithm which has several attractive properties. In addition, we characterize an orthology relation $\delta$ on some set $X$ that has a level-1 representation in terms of eight natural properties for $\delta$ as well as in terms of level-1 representations of orthology relations on certain subsets of $X$

Predicting the Evolution of the 2014–2016 California Current System Marine Heatwave From an Ensemble of Coupled Global Climate Forecasts

Throughout 2014–2016, the California Current System (CCS) was characterized by large and persistent sea surface temperature anomalies (SSTa), which were accompanied by widespread ecological and socioeconomic consequences that have been documented extensively in the scientific literature and in the popular press. This marine heatwave and others have resulted in a heightened awareness of their potential impacts and prompted questions about if and when they may be predictable. Here, we use output from an ensemble of global climate forecast systems to document which aspects of the 2014–2016 CCS heatwave were predictable and how forecast skill, or lack thereof, relates to mechanisms driving the heatwave’s evolution. We focus on four prominent SSTa changes within the 2014–2016 period: (i) the initial onset of anomalous warming in early 2014, (ii) a second rapid SSTa increase in late 2014, (iii) a sharp reduction and subsequent return of warm SSTa in mid-2015, and (iv) another anomalous warming event in early 2016. Models exhibited clear forecast skill for the first and last of these fluctuations, but not the two in the middle. Taken together with the state of knowledge on the dominant forcing mechanisms of this heatwave, our results suggest that CCS SSTa forecast skill derives from predictable evolution of pre-existing SSTa to the west (as in early 2014) and the south (as in early 2016), while the inability of models to forecast wind-driven SSTa in late 2014 and mid-2015 is consistent with the lack of a moderate or strong El Niño or La Niña event preceding those periods. The multi-model mean forecast consistently outperformed a damped persistence forecast, especially during the period of largest SSTa, and skillful CCS forecasts were generally associated with accurate representation of large-scale dynamics. Additionally, a large forecast ensemble (85 members) indicated elevated probabilities for observed SSTa extremes even when ensemble mean forecasts exhibited limited skill. Our results suggest that different types or aspects of marine heatwaves are more or less predictable depending on the forcing mechanisms at play, and events that are consistent with predictable ocean responses could inform ecosystem-based management of the ocean

A Dynamically Downscaled Ensemble of Future Projections for the California Current System

Given the ecological and economic importance of eastern boundary upwelling systems like the California Current System (CCS), their evolution under climate change is of considerable interest for resource management. However, the spatial resolution of global earth system models (ESMs) is typically too coarse to properly resolve coastal winds and upwelling dynamics that are key to structuring these ecosystems. Here we use a high-resolution (0.1°) regional ocean circulation model coupled with a biogeochemical model to dynamically downscale ESMs and produce climate projections for the CCS under the high emission scenario, Representative Concentration Pathway 8.5. To capture model uncertainty in the projections, we downscale three ESMs: GFDL-ESM2M, HadGEM2-ES, and IPSL-CM5A-MR, which span the CMIP5 range for future changes in both the mean and variance of physical and biogeochemical CCS properties. The forcing of the regional ocean model is constructed with a “time-varying delta” method, which removes the mean bias of the ESM forcing and resolves the full transient ocean response from 1980 to 2100. We found that all models agree in the direction of the future change in offshore waters: an intensification of upwelling favorable winds in the northern CCS, an overall surface warming, and an enrichment of nitrate and corresponding decrease in dissolved oxygen below the surface mixed layer. However, differences in projections of these properties arise in the coastal region, producing different responses of the future biogeochemical variables. Two of the models display an increase of surface chlorophyll in the northern CCS, consistent with a combination of higher nitrate content in source waters and an intensification of upwelling favorable winds. All three models display a decrease of chlorophyll in the southern CCS, which appears to be driven by decreased upwelling favorable winds and enhanced stratification, and, for the HadGEM2-ES forced run, decreased nitrate content in upwelling source waters in nearshore regions. While trends in the downscaled models reflect those in the ESMs that force them, the ESM and downscaled solutions differ more for biogeochemical than for physical variables

Educational debt and the gender gap: Understanding factors influencing orthodontists’ career decisions

INTRODUCTION: Orthodontic residents face challenges unparalleled to their predecessors, including competitive marketplaces, rising debt burdens, and changing demographics that have contributed to the shift in initial career choice from owner to employee. We aim to understand factors important to orthodontists at different career stages and the impact on job satisfaction through a sequential mixed methodology study. METHODS: Semistructured interviews were conducted with 25 orthodontic residents and practitioners. A survey was developed from qualitative findings that explored career decision-making of orthodontic residents and practicing orthodontists, with descriptive and bivariate statistical analyses (n = 343 orthodontists and 185 residents). RESULTS: Graduating orthodontic residents are choosing employment over ownership as their initial job, prioritizing high income to offset the educational debt. The majority of residents report thinking about their debt very often to all of the time and find it very to extremely stressful. Current residents have long-term goals of ownership, whereas practicing doctors of both genders became owners at equal frequencies. However, on average, women earn $119,000 less per year and report being the primary family caretaker more often than men. CONCLUSIONS: Excellent patient care, work-life balance, and sufficient income are the most important drivers for career choices and job satisfaction for orthodontists of all ages. Despite debt, most residents and working orthodontists report a high level of job satisfaction and would recommend the field of orthodontics to others