Risk factors for the presence of Fasciola hepatica antibodies in bulk-milk samples and their association with milk production decreases, in Cuban dairy cattle

Background: Worldwide, Fasciola hepatica infection causes high production losses in the livestock industry. Recently, studies have analyzed the association between measurements of F. hepatica infection intensity and herd management practices. The aim of the present study, the first of its kind in a subtropical region, was to evaluate associations between F. hepatica bulk-tank milk ELISA results with herd management factors and milk yield in dairy herds, in Camaguey, Cuba. The SVANOVIR (R) F. hepatica-AB ELISA was used to measure F. hepatica antibody levels in a random sample of 516 dairy herds during the period of May-July of 2014. Farm management practice data were collected using a questionnaire. Results: With 82% of the herds testing positive, the results indicate that F. hepatica is very widespread in this area. Reductions in milk production of 18 and 32% were observed in herds with Optical Density Ratios (ODR) of 0.3-0.6 and>0.6, respectively, when compared to herds with ODR<0.3. Overall, the longer the milking cows were put out to pasture, the higher the levels of anti-parasite antibodies. Co-grazing with sheep and goats also significantly increased the risk of high ODR. Conclusions: Our data show a widespread occurrence of the parasite as well as a major potential impact of the infection on the Cuban development goal of becoming self-sufficient in milk production. Our risk factor analysis suggests that the prevention of infection around water sources, and the separation of cattle from small ruminants could be useful control measures. This is the first epidemiological survey of F. hepatica abundance, and associated reductions in milk yield, in dairy herds in Cuba

Pleiotropic effects of a rel mutation on stress survival of Rhizobium etli CNPAF512

The rel gene of Rhizobium etli (relRet), the nodulating endosymbiont of the common bean plant, determines the cellular level of the alarmone (p)ppGpp and was previously shown to affect free-living growth and symbiosis. Here, we demonstrate its role in cellular adaptation and survival in response to various stresses.Journal ArticleResearch Support, Non-U.S. Gov'tinfo:eu-repo/semantics/publishe

Attitude as a Measure for Acceptance: Monitoring IS Implementation in a Hospital Setting

The aim of this study was to assess whether Attitude Toward Technology (ATT) is a better measure of technology acceptance than Behavioral Intention (BI) in a mandatory medical setting. A questionnaire was taken in two hospitals, one university (Setting 1) and one private (Setting 2). The technology studied was PACS (Picture Archiving and Communication System). The questionnaire was taken on several occasions: pre-implementation (T1, both Settings); three months post-implementation (T2, S2); and one year after the transition was completed (T3, S1; S2 is underway). Four models were assessed: (1a) original TAM with ATT, (1b) TAM with BI replacing ATT, (2a) UTAUT, and (2b) UTAUT with ATT replacing BI. Our preliminary results indicate that ATT is indeed a better measure for acceptance than BI. Variance explained in ATT ranged from .47 to .72, in BI from .12 to .45. BI was the best predictor of USE

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

Non-coding RNAs (ncRNAs) play a crucial role in the intricate regulation of bacterial gene expression, allowing bacteria to quickly adapt to changing environments. In the past few years, a growing number of regulatory RNA elements have been predicted by computational methods, mostly in well-studied gamma-proteobacteria but lately in several alpha-proteobacteria as well. Here, we have compared an extensive compilation of these non-coding RNA predictions to intergenic expression data of a whole-genome high-resolution tiling array in the soil-dwelling alpha-proteobacterium Rhizobium etli.Journal ArticleResearch Support, Non-U.S. Gov'tinfo:eu-repo/semantics/publishe

Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli

Background: The alarmone (p) ppGpp mediates a global reprogramming of gene expression upon nutrient limitation and other stresses to cope with these unfavorable conditions. Synthesis of (p) ppGpp is, in most bacteria, controlled by RelA/SpoT (Rsh) proteins. The role of (p) ppGpp has been characterized primarily in Escherichia coli and several Gram-positive bacteria. Here, we report the first in-depth analysis of the (p) ppGpp-regulon in an alpha-proteobacterium using a high-resolution tiling array to better understand the pleiotropic stress phenotype of a relA/rsh mutant. Results: We compared gene expression of the Rhizobium etli wild type and rsh (previously rel) mutant during exponential and stationary phase, identifying numerous (p) ppGpp targets, including small non-coding RNAs. The majority of the 834 (p) ppGpp-dependent genes were detected during stationary phase. Unexpectedly, 223 genes were expressed (p) ppGpp-dependently during early exponential phase, indicating the hitherto unrecognized importance of (p) ppGpp during active growth. Furthermore, we identified two (p) ppGpp-dependent key regulators for survival during heat and oxidative stress and one regulator putatively involved in metabolic adaptation, namely extracytoplasmic function sigma factor EcfG2/PF00052, transcription factor CH00371, and serine protein kinase PrkA. Conclusions: The regulatory role of (p) ppGpp in R. etli stress adaptation is far-reaching in redirecting gene expression during all growth phases. Genome-wide transcriptome analysis of a strain deficient in a global regulator, and exhibiting a pleiotropic phenotype, enables the identification of more specific regulators that control genes associated with a subset of stress phenotypes. This work is an important step toward a full understanding of the regulatory network underlying stress responses in alpha-proteobacteria

Biochar characterization of raw versus spent common ivy: Inorganic nutrient behavior

Hedera sp., common Ivy, a lignocellulosic evergreen vine, is commonly seen in gardens and yards all over the globe. It is an excellent candidate to be applied in vertical green walls to improve ecosystems in future green cities (e.g. fine particulate matter adsorption). These green walls need to be trimmed regularly, thus leaving a major residue stream which could be promising as biomass feedstock for biochar fertilizer production. However, common Ivy contains valuable compounds (e.g. etheric oils and triterpene saponins) increasing the process’ added value. These should preferably be extracted prior to thermal conversion. The aim of this study is therefore to investigate the influence of extraction methods on the final properties of common ivy’s biochar using conventional pyrolysis. Investigated extraction methods include a Soxhlet ethanol extraction and a steam distillation, to obtain respectively a triterpene saponin and volatile oil extract. The influence of these extractions on the biochar properties was studied by comparing the thermal conversion and biochar properties of spent, extracted, biomass with raw biomass. Studied properties include biochar yield, elemental composition (CHNO), amount of inorganic nutrients, specific surface area, and presence of harmful heavy metals. The guidelines of the European Biochar Certificate are used to evaluate said properties. Furthermore, the pyrolysis process parameters, temperature and heating rate, were optimized to improve said biochar properties for application as fertilizer. Tested pyrolysis temperatures were 400, 550 and 700 °C. Results show that biochar yield from raw ivy was inversely proportional with pyrolysis temperature ranging from 29.6 ± 0.6% at 400 °C, 25.4% ± 0.03 at 550 °C and 23.0 ± 0.06 % at 700 °C. It was found that steam distillation lowers the amount of heavy metals in the material, whilst the inorganic nutrients are retained, thus enhancing the biochar’s potential as fertilizer. Furthermore, nitrogen content remained constant, around 2%, before and after pyrolysis both for raw and spent ivy, these results indicate that high-quality biochars were produced. To further understand biochar’s chemical behavior in soils, structural properties and morphology are being investigated further, specific surface area via BET, general pore structure using SEM, surface functional groups with FT-IR and, aromaticity with CP/MAS 13C NMR results will be presented accordingly

External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data

The quantitative polymerase chain reaction (qPCR) is widely utilized for gene expression analysis. However, the lack of robust strategies for cross laboratory data comparison hinders the ability to collaborate or perform large multicentre studies conducted at different sites. In this study we introduced and validated a workflow that employs universally applicable, quantifiable external oligonucleotide standards to address this question. Using the proposed standards and data-analysis procedure, we obtained a perfect concordance between expression values from eight different genes in 366 patient samples measured on three different qPCR instruments and matching software, reagents, plates and seals, demonstrating the power of this strategy to detect and correct inter-run variation and to enable exchange of data between different laboratories, even when not using the same qPCR platform