High-Resolution Paleoceanography Of The Gulf Of Alaska, Subarctic Northeast Pacific Ocean, Since The Last Glacial Maximum: Insights Into A Dynamic Atmosphere-Ocean-Ecosystem Linkage At Decadal To Millennial Timescales

Thesis (Ph.D.) University of Alaska Fairbanks, 2009Environmental conditions in the Subarctic Northeast Pacific Ocean are an important component of North American climate patterns, as well as a potential driver of Northern Hemisphere climate variability. The North Pacific Ocean is also the terminus of modern global thermohaline circulation, suggesting that paleoceanographic records from this region have the potential to preserve evidence of both climate forcing and response on regional and global scales. A suite of high-resolution marine sediment cores collected from the Gulf of Alaska margin in 2004 provide new paleoceanographic records at decadal and centennial timescales from fjord and continental slope environments. Key findings include: (i) decadal oscillations in marine productivity correlate with previously identified terrestrial records, indicative of forcing by the Aleutian Low pressure cell; (ii) the standard binary model of the modern Pacific Decadal Oscillation (PDO) as the major pattern of ocean-atmosphere variability is insufficient to describe the full range of Holocene paleoenvironmental fluctuations observed in Gulf of Alaska records of marine productivity, freshwater discharge, and bottom-water anoxia; (iii) the North Pacific ecosystem is a sensitive recorder of abrupt climate events observed in global records; and (iv) the fjords of Southeast Alaska contain a detailed record of volcanic activity and fallout events useful for developing composite chronological models of sedimentation that correlate with other regionally important stratigraphic records. Collectively, the results presented here will potentially redefine current theoretical models of atmosphere-ocean-ecosystem variability in the North Pacific Ocean, as well as contribute to a growing body of high-resolution paleoenvironmental time-series datasets from the high latitudes

A global multiproxy database for temperature reconstructions of the Common Era

Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature- sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial. Nearly half of the proxy time series are significantly correlated with HadCRUT4.2 surface temperature over the period 1850–2014. Global temperature composites show a remarkable degree of coherence between high- and low-resolution archives, with broadly similar patterns across archive types, terrestrial versus marine locations, and screening criteria. The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python

The Rossiter-McLaughlin effect in Exoplanet Research

The Rossiter-McLaughlin effect occurs during a planet's transit. It provides the main means of measuring the sky-projected spin-orbit angle between a planet's orbital plane, and its host star's equatorial plane. Observing the Rossiter-McLaughlin effect is now a near routine procedure. It is an important element in the orbital characterisation of transiting exoplanets. Measurements of the spin-orbit angle have revealed a surprising diversity, far from the placid, Kantian and Laplacian ideals, whereby planets form, and remain, on orbital planes coincident with their star's equator. This chapter will review a short history of the Rossiter-McLaughlin effect, how it is modelled, and will summarise the current state of the field before describing other uses for a spectroscopic transit, and alternative methods of measuring the spin-orbit angle.Comment: Review to appear as a chapter in the "Handbook of Exoplanets", ed. H. Deeg & J.A. Belmont

Activation of PKR by a short-hairpin RNA

Recognition of viral infection often relies on the detection of double-stranded RNA (dsRNA), a process that is conserved in many different organisms. In mammals, proteins such as MDA5, RIG-I, OAS, and PKR detect viral dsRNA, but struggle to differentiate between viral and endogenous dsRNA. This study investigates an shRNA targeting DDX54\u27s potential to activate PKR, a key player in the immune response to dsRNA. Knockdown of DDX54 by a specific shRNA induced robust PKR activation in human cells, even when DDX54 is overexpressed, suggesting an off-target mechanism. Activation of PKR by the shRNA was enhanced by knockdown of ADAR1, a dsRNA binding protein that suppresses PKR activation, indicating a dsRNA-mediated mechanism. In vitro assays confirmed direct PKR activation by the shRNA. These findings emphasize the need for rigorous controls and alternative methods to validate gene function and minimize unintended immune pathway activation

Responsible AI Practice in Libraries and Archives: A Review of the Literature

Artificial intelligence (AI) has the potential to positively impact library and archives collections and services—enhancing reference, instruction, metadata creation, recommendations, and more. However, AI also has ethical implications. This paper presents an extensive literature and review analysis that examines AI projects implemented in library and archives settings, asking the following research questions: RQ1: How is artificial intelligence being used in libraries and archives practice? RQ2: What ethical concerns are being identified and addressed during AI implementation in libraries and archives? The results of this literature review show that AI implementation is growing in libraries and archives and that practitioners are using AI for increasingly varied purposes. We found that AI implementation was most common in large, academic libraries. Materials used in AI projects usually involved digitized and born digital text and images, though materials also ranged to include web archives, electronic theses and dissertations (ETDs), and maps. AI was most often used for metadata extraction and reference and research services. Just over half of the papers included in the literature review mentioned ethics or values related issues in their discussions of AI implementation in libraries and archives, and only one-third of all resources discussed ethical issues beyond technical issues of accuracy and human-in-the-loop. Case studies relating to AI in libraries and archives are on the rise, and we expect subsequent discussions of relevant ethics and values to follow suit, particularly growing in the areas of cost considerations, transparency, reliability, policy and guidelines, bias, social justice, user communities, privacy, consent, accessibility, and access. As AI comes into more common usage, it will benefit the library and archives professions to not only consider ethics when implementing local projects, but to publicly discuss these ethical considerations in shared documentation and publications

Retrospective study investigating naloxone prescribing and cost in US Medicaid and Medicare patients

Background Opioid overdoses in the USA have increased to unprecedented levels. Administration of the opioid antagonist naloxone can prevent overdoses. Objective This study was conducted to reveal the pharmacoepidemiologic patterns in naloxone prescribing to Medicaid patients from 2018 to 2021 as well as Medicare in 2019. Design Observational pharmacoepidemiologic study Setting US Medicare and Medicaid naloxone claims Intervention The Medicaid State Drug Utilisation Data File was utilised to extract information on the number of prescriptions and the amount prescribed of naloxone at a national and state level. The Medicare Provider Utilisation and Payment was also utilised to analyse prescription data from 2019. Outcome measures States with naloxone prescription rates that were outliers of quartile analysis were noted. Results The number of generic naloxone prescriptions per 100 000 Medicaid enrollees decreased by 5.3%, whereas brand naloxone prescriptions increased by 245.1% from 2018 to 2021. There was a 33.1-fold difference in prescriptions between the highest (New Mexico=1809.5) and lowest (South Dakota=54.6) states in 2019. Medicare saw a 30.4-fold difference in prescriptions between the highest (New Mexico) and lowest states (also South Dakota) after correcting per 100 000 enrollees. Conclusions This pronounced increase in the number of naloxone prescriptions to Medicaid patients from 2018 to 2021 indicates a national response to this widespread public health emergency. Further research into the origins of the pronounced state-level disparities is warranted

Antimicrobials: a global alliance for optimizing their rational use in intra-abdominal infections (AGORA)

Intra-abdominal infections (IAI) are an important cause of morbidity and are frequently associated with poor prognosis, particularly in high-risk patients. The cornerstones in the management of complicated IAIs are timely effective source control with appropriate antimicrobial therapy. Empiric antimicrobial therapy is important in the management of intra-abdominal infections and must be broad enough to cover all likely organisms because inappropriate initial antimicrobial therapy is associated with poor patient outcomes and the development of bacterial resistance. The overuse of antimicrobials is widely accepted as a major driver of some emerging infections (such as C. difficile), the selection of resistant pathogens in individual patients, and for the continued development of antimicrobial resistance globally. The growing emergence of multi-drug resistant organisms and the limited development of new agents available to counteract them have caused an impending crisis with alarming implications, especially with regards to Gram-negative bacteria. An international task force from 79 different countries has joined this project by sharing a document on the rational use of antimicrobials for patients with IAIs. The project has been termed AGORA (Antimicrobials: A Global Alliance for Optimizing their Rational Use in Intra-Abdominal Infections). The authors hope that AGORA, involving many of the world's leading experts, can actively raise awareness in health workers and can improve prescribing behavior in treating IAIs

Productivity and sedimentary delta N-15 variability for the last 17,000 years along the northern Gulf of Alaska continental slope

Biogenic opal, organic carbon, organic matter stable isotope, and trace metal data from a well-dated, high-resolution jumbo piston core (EW0408–85JC; 59° 33.3′N, 144° 9.21′W, 682 m water depth) recovered from the northern Gulf of Alaska continental slope reveal changes in productivity and nutrient utilization over the last 17,000 years. Maximum values of opal concentration (~10%) occur during the deglacial Bølling-Allerød (B-A) interval and earliest Holocene (11.2 to 10.8 cal ka BP), moderate values (~6%) occur during the Younger Dryas (13.0 to 11.2 cal ka BP) and Holocene, and minimum values (~3.5%) occur during the Late Glacial Interval (LGI). When converted to opal mass accumulation rates, the highest values (~5000 g cm⁻² kyr⁻¹) occur during the LGI prior to 16.7 cal ka BP, which points to a strong influence by LGI glacimarine sedimentation regimes. Similar patterns are also observed in total organic carbon and cadmium paleoproductivity proxies. Mid-Holocene peaks in the terrestrial organic matter fraction at 5.5, 4.7, 3.5, and 1.2 cal ka BP indicate periods of enhanced delivery of glaciomarine sediments by the Alaska Coastal Current. The B-A and earliest Holocene intervals are laminated, and enrichments of redox-sensitive elements suggest dysoxic-to-anoxic conditions in the water column. The laminations are also associated with mildly enriched sedimentary δ¹⁵N ratios, indicating a link between productivity, nitrogen cycle dynamics, and sedimentary anoxia. After applying a correction for terrestrial δ¹⁵N contributions based on end-member mixing models of terrestrial and marine organic matter, the resulting B-A marine δ¹⁵N (6.3 ± 0.4 ‰) ratios are consistent with either mild denitrification, or increased nitrate utilization. These findings can be explained by increased micronutrient (Fe) availability during episodes of rapid rising sea level that released iron from the previously subaerial coastal plain; iron input from enhanced terrestrial runoff; and/or the intermittent presence of seasonal sea ice resulting from altered ocean/atmospheric circulation during the B-A in the Gulf of Alaska

Early retreat of the Alaska Peninsula Glacier Complex and the implications for coastal migrations of First Americans

The debate over a coastal migration route for the First Americans revolves around two major points: seafaring technology, and a viable landscape and resource base. Three lake cores from Sanak Island in the western Gulf of Alaska yield the first radiocarbon ages from the continental shelf of the Northeast Pacific and record deglaciation nearly 17 ka BP (thousands of calendar years ago), much earlier than previous estimates based on extrapolated data from other sites outside the coastal corridor in the Gulf of Alaska. Pollen data suggest an arid, terrestrial ecosystem by 16.3 ka BP. Therefore glaciers would not have hindered the movement of humans along the southern edge of the Bering Land Bridge for two millennia before the first well-recognized “New World” archaeological sites were inhabited.Keywords: First Americans, Deglaciation, Coastal migratio

Multi-proxy record of ocean-climate variability during the last two millennia on the Mackenzie Shelf, Beaufort Sea

A 2,000 year-long oceanographic history, in sub-centennial resolution, from a Canadian Beaufort Sea continental shelf site (60meters water depth) near the Mackenzie River outlet is reconstructed from ostracode and foraminifera faunal assemblages, shell stable isotopes (delta 18O, delta 13C) and sediment biogenic silica. The chronology of three sediment cores making up the composite section was established using 137Cs and 210Pb dating for the most recent 150 years and combined with linear interpolation of radiocarbon dates from bivalve shells and foraminifera tests.Continuous centimeter-sampling of the multicore and high-resolution sampling of a gravity and piston core yielded a time-averaged faunal record of every approximately 40 years from 0 to 1850 CE and every approximately 24 years from 1850 to 2013 CE. Proxy records were consistent with temperature oscillations and related changes in organic carbon cycling associated with the Medieval Climate Anomaly (MCA) and the Little Ice Age (LIA). Abundance changes in dominant microfossil species, such as the ostracode Paracyprideis pseudopunctillata and agglutinated foraminifers Spiroplectammina biformis and S. earlandi, are used as indicators of less saline, and possibly corrosive/turbid bottom conditions associated with the MCA (approximately 800 to 1200 CE) and the most recent approximately 60 years (1950–2013). During these periods, pronounced fluctuations in these species suggest that prolonged seasonal sea-ice melting, changes in riverine inputs and sediment dynamics affected the benthic environment. Taxa analyzed for stable oxygen isotope composition of carbonates show the lowest delta 18O values during intervals within the MCA and the highest during the late LIA, which is consistent with a 1 degree to 2 degree C cooling of bottom waters. Faunal and isotopic changes during the cooler LIA (1300 to 1850 CE) are most apparent at approximately 1500 to 1850 CE and are particularly pronounced during 1850 to approximately 1900 CE, with an approximate 0.5 per mil increase in delta 18O values of carbonates from median values in the analyzed taxa. This very cold 50-year period suggests that enhanced summer sea ice suppressed productivity,which is indicated by low sediment biogenic silica values and lower delta 13C values in analyzed species. From 1900CE to present, declines in calcareous faunal assemblages and changes in dominant species (Cassidulina reniforme and P. pseudopunctillata) are associated with less hospitable bottom waters, indicated by a peak in agglutinated foraminifera from 1950 to 1990 CE