ICE-TheOREM - End to End Semantically Aware eResearch Infrastructure for Theses

4th International Conference on Open RepositoriesThis presentation was part of the session : Conference PresentationsDate: 2009-05-19 10:00 AM – 11:30 AMICE-TheOREM was a project which made several important contributions to the repository domain, promoting deposit by integrating the repository with authoring workflows and enhancing open access, by adding new infrastructure to allow fine-grained embargo management within an institution without impacting on existing open access repository infrastructure. In the area of scholarly communications workflows, the project produced a complete end-to-end demonstration of eScholarship for word processor users, with tools for authoring, managing and disseminating semantically-rich thesis documents fully integrated with supporting data. This work is focused on theses, as it is well understood that early career researchers are the most likely to lead the charge in new innovations in scholarly publishing and dissemination models. The authoring tools are built on the ICE content management system, which allows authors to work within a word processing system (as most authors do) with easy-to-use toolbars to structure and format their documents. The ICE system manages both small data files and links to larger data sets. The result is research publication which are available not just as paper-ready PDF files but as fully interactive semantically aware web documents which can be disseminated via repository software such as ePrints, DSpace and Fedora as complete supported web-native One the technological side, ICE-TheOREM implemented the Object Reuse and Exchange (ORE) protocol to integrate between a content management system, a thesis management system and multiple repository software packages and looked at ways to describe aggregate objects which include both data and documents, which can be generalized to domains other than chemistry. ICE-TheOREM has demonstrated how focusing on the use of the web architecture (including ORE) enables repository functions to be distributed between systems for complex, data-rich compound objects.UK Joint Information Systems Committee (JISC

Special Issue: Cannabis

In this special issue, California Agriculture presents research articles on cannabis production, the economics of California's cannabis industry, and the social and community impacts of cannabis

Chem# - Semantically Enriched Linked Open Chemical Data

The problem: Vast quantities of chemical data (e.g. crystal structures, NMR spectra, experimental reports) are generated every day. The majority of this data is never published, and the data that is published is fragmented,trapped in legacy formats and difficult to discover. The solution: Semantically Enriched Linked Open Chemical Data: browsable, searchable, discoverable and interpretable by humans and machines alike, using standardized extensible data formats (Chemical Markup Language) and technologies (HTTP, RDF).Funded by JISC

Plausible responses to the threat of rapid sea-level rise for the Thames Estuary

This paper considers the perceptions and responses of selected stakeholders to a scenarion of rapid rise in sea-level due to the collapse of the West Antarctic ice sheet, which could produce a global rise in sea-level of 5 to 6 metres. Through a process of dialogue involving one-to one interviews and a one-day policy exercise, we addressed influences on decision-making when information is uncertain and our ability to plan, prepare for and implement effective ways of coping with this extreme scenario. Through these interactions we hoped to uncover plausible responses to the scenario and identify potential weaknesses in our current flood management approaches to dealing with such an occurrence. By undertaking this exploratory exercise we hoped to find out whether this was a feasible way to deal with such a low probability but high consequence scenario. It was the process of finding a solution that interested us rather than the technical merits of one solution over another. We were not intending to produce definitive set of recommendations on how to respond but to gain insights into the process of making a decision, specifically what influences it and what assumptions are made.Sea level rise, London

Handling Repository-Related Interoperability Issues: the SONEX Workgroup

12 pages, 4 figures.-- Contributed to: 2nd DL.org Workshop "Making Digital Libraries Interoperable: Challenges and Approaches" (Glasgow, Sep 9-10, 2010).To be published by Springer in its 'Lecture Notes in Computer Science' series.Sharing of scholarly content through a network of Open Access repositories is becoming commonplace but there is still need for systematic attention into ways to increase the rate of deposit into, and transfer of content across, the OA repository space. This is a report of the work of a small international group, supported by JISC, with remit to describe, analyse and make recommendations on deposit opportunities and use cases that might provide a framework for project activity geared to the ingest of research papers and other scholarly works. The multi-authored, multi-institutional work is put forward as the default, and nine use case actors are listed, as deposit agents, with four main use case scenarios. There is also some comment and pointers to projects in Europe which address some of these use case scenarios.Joint Information Systems Committee (JISC)Publicad

Extracting and re-using research data from chemistry e-theses: the SPECTRa-T project

Scientific e-theses are data-rich resources, but much of the information they contain is not readily accessible. For chemistry, the SPECTRa-T project has addressed this problem by developing data-mining techniques to extract experimental data, creating RDF (Resource Description Framework) triples for exposure to sophisticated Semantic Web searches. We used OSCAR3, an Open Source chemistry text-mining tool, to parse and extract data from theses in PDF, and from theses in Office Open XML document format. Theses in PDF suffered data corruption and a loss of formatting that prevented the identification of chemical objects. Theses in .docx yielded semantically rich SciXML that enabled the additional extraction of associated data. Chemical objects were placed in a data repository, and RDF triples deposited in a triplestore. Data-mining from chemistry e-theses is both desirable and feasible; but the use of PDF, the de facto format standard for deposit in most repositories, prevents the optimal extraction of data for semantic querying. In order to facilitate this, we recommend that universities also require deposition of chemistry e-theses in an XML document format. Further work is required to clarify the complex IPR issues and ensure that they do not become an unwarranted barrier to data extraction and re-use

The semantic architecture of the World-Wide Molecular Matrix (WWMM)

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.Abstract The World-Wide Molecular Matrix (WWMM) is a ten year project to create a peer-to-peer (P2P) system for the publication and collection of chemical objects, including over 250, 000 molecules. It has now been instantiated in a number of repositories which include data encoded in Chemical Markup Language (CML) and linked by URIs and RDF. The technical specification and implementation is now complete. We discuss the types of architecture required to implement nodes in the WWMM and consider the social issues involved in adoption.Peer Reviewe

Localization, Internationalization and DSpace

In common with most software, DSpace was written with an English speaking audience in mind. It has subsequently been adopted by users for whom English is not a first language, and to store resources in non-English languages and scripts. This broadening of language base looks set to continue. Localization is an inevitable consequence of this broadening user base, as new users adapt the software to support content in new languages, and customize the interface so that it can be used by non-English speakers. Without internationalization, localization efforts are isolated, difficult and often have no standard approach. In order to expedite the global distribution of DSpace, it is important to look at ways of unifying and facilitating localization efforts through internationalization. This article will explain some approaches to internationalization and localization, and highlight some of the difficulties and complexities involved. It will describe the current capabilities of DSpace software with regard to internationalization and localization, and look ahead at how, and when, these capabilities might be enhanced

Desert REC: Educational outreach and crop breeding

Located in the Imperial Valley, this research station runs UC ANR's biggest agricultural outreach program and hosts the largest public carrot breeding program in the Americas