Structural insights into the gating of DNA passage by the topoisomerase II DNA-gate.

Type IIA topoisomerases (Top2s) manipulate the handedness of DNA crossovers by introducing a transient and protein-linked double-strand break in one DNA duplex, termed the DNA-gate, whose opening allows another DNA segment to be transported through to change the DNA topology. Despite the central importance of this gate-opening event to Top2 function, the DNA-gate in all reported structures of Top2-DNA complexes is in the closed state. Here we present the crystal structure of a human Top2 DNA-gate in an open conformation, which not only reveals structural characteristics of its DNA-conducting path, but also uncovers unexpected yet functionally significant conformational changes associated with gate-opening. This structure further implicates Top2's preference for a left-handed DNA braid and allows the construction of a model representing the initial entry of another DNA duplex into the DNA-gate. Steered molecular dynamics calculations suggests the Top2-catalyzed DNA passage may be achieved by a rocker-switch-type movement of the DNA-gate

Detection of subtle neurological alterations by the Catwalk XT gait analysis system

BACKGROUND: A new version of the CatWalk XT system was evaluated as a tool for detecting very subtle alteration in gait based on higher speed sample rate; the system could also demonstrate minor changes in neurological function. In this study, we evaluated the neurological outcome of sciatic nerve injury intervened by local injection of hyaluronic acid. Using the CatWalk XT system, we looked for differences between treated and untreated groups and differences within the same group as a function of time so as to assess the power of the Catwalk XT system for detecting subtle neurological change. METHODS: Peripheral nerve injury was induced in 36 Sprague–Dawley rats by crushing the left sciatic nerve using a vessel clamp. The animals were randomized into one of two groups: Group I: crush injury as the control; Group II: crush injury and local application with hyaluronic acid. These animals were subjected to neurobehavior assessment, histomorphology evaluation, and electrophysiology study periodically. These data were retrieved for statistical analysis. RESULTS: The density of neurofilament and S-100 over the distal end of crushed nerve showed significant differences either in inter-group comparison at various time points or intra-group comparison from 7 to 28 days. Neuronal structure architecture, axon counts, intensity of myelination, electrophysiology, and collagen deposition demonstrate significant differences between the two groups. There was significant difference of SFI and angle of ankle in inter- group analysis from 7 to 28 days, but there were no significant differences in SFI and angle of ankle at time points of 7 and 14 days. In the Cat Walk XT analysis, the intensity, print area, stance duration, and swing duration all showed detectable differences at 7, 14, 21, and 28 days, whereas there were no significant difference at 7 and 14 days with CatWalk 7 testing. In addition, there were no significant differences of step sequence or regularity index between the two versions. CONCLUSION: Hyaluronic acid augmented nerve regeneration as early as 7 days after crush injury. This subtle neurological alteration could be detected through the CatWalk XT gait analysis but not the SFI, angle of ankle, or CatWalk 7 methods

Effects of Blowing Ratios on Heat Transfer to the Throat Region of a Porous-Walled Nozzle

The effects of transpiration cooling on heat transfer in the throat region of a porous-walled nozzle were investigated. The experiments were performed in the AFIT low speed shock tube fitted with a Mach 2 nozzle. A blowing region was limited to the area from 1.3 cm prior to the throat to 1.2 cm downstream of the throat. The blowing ratios from -0.0002 (suction) to 0.0117 (blowing) of the main stream flow were studied. Heat flux data were taken from both sides of the nozzle. One side was transpiration cooled by secondary air injection through a porous wall, while the other side was an impermeable surface. The transpiration cooled side results showed up to a 40% reduction in heat transfer coefficient at the blowing ratio of 0.0116. Also, with this small blowing region (from 1.3 cm upstream of the nozzle throat to 1.2 cm downstream of the nozzle throat), the results of the exit Mach number and boundary layer thickness showed good improvement compared to a larger blowing region (from 1.3 cm upstream of the throat to 8.8 cm downstream of the throat). (MM

Tunable Multifunctional Topological Insulators in Ternary Heusler Compounds

Recently the Quantum Spin Hall effect (QSH) was theoretically predicted and experimentally realized in a quantum wells based on binary semiconductor HgTe[1-3]. QSH state and topological insulators are the new states of quantum matter interesting both for fundamental condensed matter physics and material science[1-11]. Many of Heusler compounds with C1b structure are ternary semiconductors which are structurally and electronically related to the binary semiconductors. The diversity of Heusler materials opens wide possibilities for tuning the band gap and setting the desired band inversion by choosing compounds with appropriate hybridization strength (by lattice parameter) and the magnitude of spin-orbit coupling (by the atomic charge). Based on the first-principle calculations we demonstrate that around fifty Heusler compounds show the band inversion similar to HgTe. The topological state in these zero-gap semiconductors can be created by applying strain or by designing an appropriate quantum well structure, similar to the case of HgTe. Many of these ternary zero-gap semiconductors (LnAuPb, LnPdBi, LnPtSb and LnPtBi) contain the rare earth element Ln which can realize additional properties ranging from superconductivity (e. g. LaPtBi[12]) to magnetism (e. g. GdPtBi[13]) and heavy-fermion behavior (e. g. YbPtBi[14]). These properties can open new research directions in realizing the quantized anomalous Hall effect and topological superconductors.Comment: 20 pages, 5 figure

Does Long-Term Use of Silver Nanoparticles Have Persistent Inhibitory Effect on H. pylori Based on Mongolian Gerbil’s Model?

It is urgent to find alternative agents due to increasing failure rate of Helicobacter pylori (H. pylori) eradication. The study surveyed the long-term effect of silver nanoparticles (AgNP) on H. pylori based on Mongolian gerbil's model

Fail Over Strategy for Fault Tolerance in Cloud Computing Environment

YesCloud fault tolerance is an important issue in cloud computing platforms and applications. In the event of an unexpected system failure or malfunction, a robust fault-tolerant design may allow the cloud to continue functioning correctly possibly at a reduced level instead of failing completely. To ensure high availability of critical cloud services, the application execution and hardware performance, various fault tolerant techniques exist for building self-autonomous cloud systems. In comparison to current approaches, this paper proposes a more robust and reliable architecture using optimal checkpointing strategy to ensure high system availability and reduced system task service finish time. Using pass rates and virtualised mechanisms, the proposed Smart Failover Strategy (SFS) scheme uses components such as Cloud fault manager, Cloud controller, Cloud load balancer and a selection mechanism, providing fault tolerance via redundancy, optimized selection and checkpointing. In our approach, the Cloud fault manager repairs faults generated before the task time deadline is reached, blocking unrecoverable faulty nodes as well as their virtual nodes. This scheme is also able to remove temporary software faults from recoverable faulty nodes, thereby making them available for future request. We argue that the proposed SFS algorithm makes the system highly fault tolerant by considering forward and backward recovery using diverse software tools. Compared to existing approaches, preliminary experiment of the SFS algorithm indicate an increase in pass rates and a consequent decrease in failure rates, showing an overall good performance in task allocations. We present these results using experimental validation tools with comparison to other techniques, laying a foundation for a fully fault tolerant IaaS Cloud environment

Emergent quantum confinement at topological insulator surfaces

Bismuth-chalchogenides are model examples of three-dimensional topological insulators. Their ideal bulk-truncated surface hosts a single spin-helical surface state, which is the simplest possible surface electronic structure allowed by their non-trivial $\mathbb{Z}_2$ topology. They are therefore widely regarded ideal templates to realize the predicted exotic phenomena and applications of this topological surface state. However, real surfaces of such compounds, even if kept in ultra-high vacuum, rapidly develop a much more complex electronic structure whose origin and properties have proved controversial. Here, we demonstrate that a conceptually simple model, implementing a semiconductor-like band bending in a parameter-free tight-binding supercell calculation, can quantitatively explain the entire measured hierarchy of electronic states. In combination with circular dichroism in angle-resolved photoemission (ARPES) experiments, we further uncover a rich three-dimensional spin texture of this surface electronic system, resulting from the non-trivial topology of the bulk band structure. Moreover, our study reveals how the full surface-bulk connectivity in topological insulators is modified by quantum confinement.Comment: 9 pages, including supplementary information, 4+4 figures. A high resolution version is available at http://www.st-andrews.ac.uk/~pdk6/pub_files/TI_quant_conf_high_res.pd

The potential impact of primary headache disorders on stroke risk

Distribution of PHDs. (DOC 55 kb

Circular dichroism in angle-resolved photoemission spectroscopy of topological insulators

Topological insulators are a new phase of matter that exhibits exotic surface electronic properties. Determining the spin texture of this class of material is of paramount importance for both fundamental understanding of its topological order and future spin-based applications. In this article, we review the recent experimental and theoretical studies on the differential coupling of left- versus right-circularly polarized light to the topological surface states in angle-resolved photoemission spectroscopy. These studies have shown that the polarization of light and the experimental geometry plays a very important role in both photocurrent intensity and spin polarization of photoelectrons emitted from the topological surface states. A general photoemission matrix element calculation with spin-orbit coupling can quantitatively explain the observations and is also applicable to topologically trivial systems. These experimental and theoretical investigations suggest that optical excitation with circularly polarized light is a promising route towards mapping the spin-orbit texture and manipulating the spin orientation in topological and other spin-orbit coupled materials.Comment: submitted to Phys. Status Solidi RR