Three applications of path integrals: equilibrium and kinetic isotope effects, and the temperature dependence of the rate constant of the [1,5] sigmatropic hydrogen shift in (Z)-1,3-pentadiene

Recent experiments have confirmed the importance of nuclear quantum effects even in large biomolecules at physiological temperature. Here we describe how the path integral formalism can be used to describe rigorously the nuclear quantum effects on equilibrium and kinetic properties of molecules. Specifically, we explain how path integrals can be employed to evaluate the equilibrium (EIE) and kinetic (KIE) isotope effects, and the temperature dependence of the rate constant. The methodology is applied to the [1,5] sigmatropic hydrogen shift in pentadiene. Both the KIE and the temperature dependence of the rate constant confirm the importance of tunneling and other nuclear quantum effects as well as of the anharmonicity of the potential energy surface. Moreover, previous results on the KIE were improved by using a combination of a high level electronic structure calculation within the harmonic approximation with a path integral anharmonicity correction using a lower level method.Comment: 9 pages, 4 figure

1897 Ruby Yearbook

A digitized copy of the 1897 Ruby, the Ursinus College yearbook.https://digitalcommons.ursinus.edu/ruby/1003/thumbnail.jp

Public policies to support agroecology in Latin America and the Caribbean

Latin American agroecology proposes a transformation of conventional agri-food systems. It is driven by social movements that have succeeded in forming coalitions that have promoted its integration into public policies. These policies involve a range of instruments that are often embedded in programmes that also support organic agriculture and sustainable agriculture. However, while these two types of agriculture propose more ecological practices, they do not question the basis of the conventional agri-food system. The implementation of instruments to support agroecology therefore depends on the power relations established within each country. This Perspective analyses these policies and their influence on the development of agroecology in eight countries: Argentina, Brazil, Chile, Costa Rica, Cuba, El Salvador, Mexico, and Nicaragua. These policies remain fragile, while support for large-scale conventional agriculture is still predominant. Their challenge is therefore to convince more broadly farmers, consumers and policymakers about the importance of issues such as public health and food security

Glomerulocystic kidney disease

Glomerulocystic disease is a rare renal cystic disease with a long descriptive history. Findings from recent studies have significantly advanced the pathophysiological understanding of the disease processes leading to this peculiar phenotype. Many genetic syndromes associated with glomerulocystic disease have had their respective proteins localized to primary cilia or centrosomes. Transcriptional control of renal developmental pathways is dysregulated in obstructive diseases that also lead to glomerulocystic disease, emphasizing the importance of transcriptional choreography between renal development and renal cystic disease

The dissociation catastrophe in fluctuating-charge models and its implications for the concept of atomic electronegativity

We have recently developed the QTPIE (charge transfer with polarization current equilibration) fluctuating-charge model, a new model with correct dissociation behavior for nonequilibrium geometries. The correct asymptotics originally came at the price of representing the solution in terms of charge-transfer variables instead of atomic charges. However, we have found an exact reformulation of fluctuating-charge models in terms of atomic charges again, which is made possible by the symmetries of classical electrostatics. We show how this leads to the distinguishing between two types of atomic electronegativities in our model. While one is a intrinsic property of individual atoms, the other takes into account the local electrical surroundings. This suggests that this distinction could resolve some confusion surrounding the concept of electronegativity as to whether it is an intrinsic property of elements, or otherwise.Comment: 17 pages, prepared for "Proceedings of QSCP-XIII" in Prog. Theor. Chem. Phy