Genome resequencing of backross progeny of <i>D. simulans </i>balancer chromosome j2LM1 crossed to <i>D. mauritiana</i>.

Light shotgun Illumina resequencing of flies resulting from backcrossing a new balancer chromosome for chromosome arm 2L in D. simulans to D. mauritiana. Reads were subjected to the multiplex shotgun genotyping platform described in Andolfatto et al. (2011). Andolfatto, Peter, Dan Davison, Deniz Erezyilmaz, Tina T Hu, Joshua Mast, Tomoko Sunayama-Morita, and David L Stern. “Multiplexed Shotgun Genotyping for Rapid and Efficient Genetic Mapping.” Genome Research 21, no. 4 (April 2011): 610–17. https://doi.org/10.1101/gr.115402.110.</p

Genome resequencing of D. simulans j3RM1 balancer backcrossed to D. mauritiana

Raw sequence data from backcrosses of j3RM1 balancer to D. mauritian

Full plasmid sequences

Full plasmid sequences of all new plasmids described in pape

Multi-sequence alignment files

Multisequence alignment files for sequence logos in manuscript "Gene structure-based homology search identifies highly divergent putative effector gene family", Stern and Han, BioRxiv https://doi.org/10.1101/2021.09.24.461719. Please contact Clair Han at [email protected] with any questions. See related materials in collection at https://doi.org/10.25378/janelia.c.5778905. Hcor Fig 2B: Hcor_gene_cluster1_v5.5.6.mafft_auto.trimal_30.fa Fig 2C: Hcor_gene_cluster2_v5.5.6.mafft_auto.trimal_50.fa Fig 3B: Hcor_bicycle_gene_100_v5.5.6ii.mafft_auto.fa Fig 3C: Hcor_bicycle_gene_200_v5.5.6ii.mafft_auto.fa Fig 3D: Hcor_bicycle_gene_300_v5.5.6ii.mafft_auto.fa Fig 3E: Hcor_bicycle_gene_400_v5.5.6ii.mafft_auto.fa Tnig Fig 4B: Tnig_gene_cluster1_v5.5.6.mafft_auto.fa Fig 4C: Tnig_gene_cluster2_v5.5.6.mafft_auto.fa Fig 4D: Tnig_gene_cluster3_v5.5.6.mafft_auto.fa Fig 4E: Tnig_gene_cluster4_v5.5.6.mafft_auto.fa Apis Fig 5A: Apis_bicycle_gene_100_200_v5.5.6.Mathers.mafft_auto.fa Mper Fig S9C: Mper.bicycle_gene_200_v5.5.6.mafft_auto.fa Pnig Fig S9D: Pnig.bicycle_gene_100_v5.5.6.mafft_auto.fa Rmai Fig S9E: Rmai.bicycle_gene_200_v5.5.6.mafft_auto.fa Cced Fig S9F: Cced.bicycle_gene_200_v5.5.6.mafft_auto.fa Dvit Fig S10A: Dvit.bicycle_gene_v5.5.6.mafft_auto.fa Mhir Fig S10B: Mhir.bicycle_gene_v5.5.6.mafft_auto.fa Psol Fig S10C: Psol.gene_v5.5.6.mafft_auto.fa </p