Route information from a central route planner

We present a discussion of a problem posed by researchers of the comapny Ericsson, namely, to estimate the fraction of road users in a road network that must participate in a central route planning scheme such that travel time predictions improve significantly. The aim of this work is to derive a measure of travel time performance depending on the number of road users who are participating in the central route planner. The approach is mainly of a statistical nature

Equivariant singularity theory with distinguished parameters: Two case studies of resonant Hamiltonian systems

We consider Hamiltonian systems near equilibrium that can be (formally) reduced to one degree of freedom. Spatio-temporal symmetries play a key role. The planar reduction is studied by equivariant singularity theory with distinguished parameters. The method is illustrated on the conservative spring-pendulum system near resonance, where it leads to integrable approximations of the iso-energetic Poincaré map. The novelty of our approach is that we obtain information on the whole dynamics, regarding the (quasi-) periodic solutions, the global configuration of their invariant manifolds, and bifurcations of these.

Dog as an outgroup to human and mouse

Copyright 2007 Gerton Lunter. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Resonances in a spring-pendulum: algorithms for equivariant singularity theory

A spring-pendulum in resonance is a time-independent Hamiltonian model system for formal reduction to one degree of freedom, where some symmetry (reversibility) is maintained. The reduction is handled by equivariant singularity theory with a distinguished parameter, yielding an integrable approximation of the Poincaré map. This makes a concise description of certain bifurcations possible. The computation of reparametrizations from normal form to the actual system is performed by Gröbner basis techniques.

Developing and applying heterogeneous phylogenetic models with XRate

Modeling sequence evolution on phylogenetic trees is a useful technique in computational biology. Especially powerful are models which take account of the heterogeneous nature of sequence evolution according to the "grammar" of the encoded gene features. However, beyond a modest level of model complexity, manual coding of models becomes prohibitively labor-intensive. We demonstrate, via a set of case studies, the new built-in model-prototyping capabilities of XRate (macros and Scheme extensions). These features allow rapid implementation of phylogenetic models which would have previously been far more labor-intensive. XRate's new capabilities for lineage-specific models, ancestral sequence reconstruction, and improved annotation output are also discussed. XRate's flexible model-specification capabilities and computational efficiency make it well-suited to developing and prototyping phylogenetic grammar models. XRate is available as part of the DART software package: http://biowiki.org/DART .Comment: 34 pages, 3 figures, glossary of XRate model terminolog