OWEZ pelagic fish, progress report and progression after T1

This report presents the current status of pelagic fish research in the Offshore Windfarm Egmond aan Zee (OWEZ) after having finalized the T0 baseline survey in 2003 and the T1 survey after construction of the wind farm in 2007. The T0 study indicated a highly dynamic pelagic fish community along the Dutch coast: species composition were found highly variable on a local scale and clear hot spots appeared abandoned when returning the next day. This picture was confirmed in the T1 survey where the species composition of the catches in the entire coastal zone were found completely different from the ones 4 years earlier. Although no clear and direct effect of the wind farm has been observed yet, the above described information tells us to look for more local effects where we should focus on underlying processes in fish community behaviour. The effects of a single windfarm seem difficult to measure but when the Dutch government allows a drastic increase in such wind farms in the North Sea, the local effect will become a regional effect and might start to influence complete fish stocks. Therefore, complementary research will be executed by studying fish behaviour in the wind farm itself

On embryo implantation

Homburg, R. [Promotor]Hompes, P.G.A. [Copromotor]Lambalk, C.B. [Copromotor

A logic of graph conditions extended with paths

In this paper we tackle the problem of extending the logic of nested graph conditions with paths. This means, for instance, that we may state properties about the existence of paths between some given nodes. As a main contribution, a sound and complete tableau method is defined for reasoning about this kind of properties.Peer ReviewedPostprint (published version

Optical 3D measurement techniques in archaeology: recent developments and applications

This paper is intended to give an overview on current surveying techniques that use remotely sensed data, and their applications in archaeology. The focus is on optical 3D measurement techniques based on image and range sensors. Data and methods are briefly reviewed, whereas data processing and related problems are only touched on in passing. For the purpose of this review we distinguish three scales of archaeological research at which the surveying techniques discussed here can be applied: (1) the regional scale, to record the topography of archaeological landscapes and to detect and map archaeological features, (2) the local scale, to record smaller sites and their architecture and excavated features, and (3) the object scale, to record artefacts and excavated finds

Towards a navigational logic for graphical structures

One of the main advantages of the Logic of Nested Conditions, defined by Habel and Pennemann, for reasoning about graphs, is its generality: this logic can be used in the framework of many classes of graphs and graphical structures. It is enough that the category of these structures satisfies certain basic conditions. In a previous paper [14], we extended this logic to be able to deal with graph properties including paths, but this extension was only defined for the category of untyped directed graphs. In addition it seemed difficult to talk about paths abstractly, that is, independently of the given category of graphical structures. In this paper we approach this problem. In particular, given an arbitrary category of graphical structures, we assume that for every object of this category there is an associated edge relation that can be used to define a path relation. Moreover, we consider that edges have some kind of labels and paths can be specified by associating them to a set of label sequences. Then, after the presentation of that general framework, we show how it can be applied to several classes of graphs. Moreover, we present a set of sound inference rules for reasoning in the logic.Peer ReviewedPostprint (author's final draft

Acclimation responses of Arabidopsis thaliana to sustained phosphite treatments

Phosphite () induces a range of physiological and developmental responses in plants by disturbing the homeostasis of the macronutrient phosphate. Because of its close structural resemblance to phosphate, phosphite impairs the sensing, membrane transport, and subcellular compartmentation of phosphate. In addition, phosphite induces plant defence responses by an as yet unknown mode of action. In this study, the acclimation of Arabidopsis thaliana plants to a sustained phosphite supply in the growth medium was investigated and compared with plants growing under varying phosphate supplies. Unlike phosphate, phosphite did not suppress the formation of lateral roots in several Arabidopsis accessions. In addition, the expression of well-documented phosphate-starvation-induced genes, such as miRNA399d and At4, was not repressed by phosphite accumulation, whilst the induction of PHT1;1 and PAP1 was accentuated. Thus, a mimicking of phosphate by phosphite was not observed for these classical phosphate-starvation responses. Metabolomic analysis of phosphite-treated plants showed changes in several metabolite pools, most prominently those of aspartate, asparagine, glutamate, and serine. These alterations in amino acid pools provide novel insights for the understanding of phosphite-induced pathogen resistance