Kinematics and morphology of ionized gas in Hickson Compact Group 18

We present new observations of $H\alpha$ emission in the Hickson Compact Group 18 (HCG 18) obtained with a scanning Fabry-Perot interferometer. The velocity field does not show motions of individual group members but, instead, a complex common velocity field for the whole group. The gas distribution is very asymmetric with clumps of maximum intensity coinciding with the optically brightest knots. Comparing $H\alpha$ and HI data we conclude that HCG 18 is not a compact group but instead a large irregular galaxy with several clumps of star formation.Comment: Accepted for publication in Astronomical Journal (13p 6 figures

The integral equation approach to kinematic dynamo theory and its application to dynamo experiments in cylindrical geometry

The conventional magnetic induction equation that governs hydromagnetic dynamo action is transformed into an equivalent integral equation system. An advantage of this approach is that the computational domain is restricted to the region occupied by the electrically conducting fluid and to its boundary. This integral equation approach is first employed to simulate kinematic dynamos excited by Beltrami-like flows in a finite cylinder. The impact of externally added layers around the cylinder on the onset of dynamo actions is investigated. Then it is applied to simulate dynamo experiments within cylindrical geometry including the von Karman sodium (VKS) experiment and the Riga dynamo experiment. A modified version of this approach is utilized to investigate magnetic induction effects under the influence of externally applied magnetic fields which is also important to measure the proximity of a given dynamo facility to the self-excitation threshold.Comment: 22 pages, 14 figure

Gap, a mycobacterial specific integral membrane protein, is required for glycolipid transport to the cell surface

The cell envelope of mycobacteria is a complex multilaminar structure that protects the cell from stresses encountered in the environment, and plays an important role against the bactericidal activity of immune system cells. The outermost layer of the mycobacterial envelope typically contains species-specific glycolipids. Depending on the mycobacterial species, the major glycolipid localized at the surface can be either a phenolglycolipid or a peptidoglycolipid (GPL). Currently, the mechanism of how these glycolipids are addressed to the cell surface is not understood. In this study, by using a transposon library of Mycobacterium smegmatis and a simple dye assay, six genes involved in GPLs synthesis have been characterized. All of these genes are clustered in a single genomic region of approximately 60 kb. We show by biochemical analyses that two non-ribosomal peptide synthetases, a polyketide synthase, a methyltransferase and a member of the MmpL family are required for the biosynthesis of the GPLs backbone. Furthermore, we demonstrate that a small integral membrane protein of 272 amino acids named Gap (gap: GPL addressing protein) is specifically required for the transport of the GPLs to the cell surface. This protein is predicted to contain six transmembrane segments and possesses homologues across the mycobacterial genus, thus delineating a new protein family. This Gap family represents a new paradigm for the transport of small molecules across the mycobacterial envelope, a critical determinant of mycobacterial virulence

Long-time discrete particle effects versus kinetic theory in the self-consistent single-wave model

The influence of the finite number N of particles coupled to a monochromatic wave in a collisionless plasma is investigated. For growth as well as damping of the wave, discrete particle numerical simulations show an N-dependent long time behavior resulting from the dynamics of individual particles. This behavior differs from the one due to the numerical errors incurred by Vlasov approaches. Trapping oscillations are crucial to long time dynamics, as the wave oscillations are controlled by the particle distribution inhomogeneities and the pulsating separatrix crossings drive the relaxation towards thermal equilibrium.Comment: 11 pages incl. 13 figs. Phys. Rev. E, in pres

Kang-Redner Anomaly in Cluster-Cluster Aggregation

The large time, small mass, asymptotic behavior of the average mass distribution \pb is studied in a $d$-dimensional system of diffusing aggregating particles for $1\leq d \leq 2$. By means of both a renormalization group computation as well as a direct re-summation of leading terms in the small reaction-rate expansion of the average mass distribution, it is shown that \pb \sim \frac{1}{t^d} (\frac{m^{1/d}}{\sqrt{t}})^{e_{KR}} for $m \ll t^{d/2}$, where $e_{KR}=\epsilon +O(\epsilon ^2)$ and $\epsilon =2-d$. In two dimensions, it is shown that \pb \sim \frac{\ln(m) \ln(t)}{t^2} for $m \ll t/ \ln(t)$. Numerical simulations in two dimensions supporting the analytical results are also presented.Comment: 11 pages, 6 figures, Revtex

Genomic selection for water use efficiency in Japonica rice and evaluation of different parameters implicated on the accuracy level. [P 0778]

Conjunction of high-throughput marker technologies and new statistical methods has recently given birth to a new breeding strategy called genomic selection (GS). The method use genome-wide dense marker genotyping for the prediction of genetic values (GEBV) with enough accuracy to allow selection based on GEBV alone. We present here GS for water use efficiency in rice, in the framework of a pedigree breeding scheme. The training population (TP) was composed of 284 accessions belonging to temperate and tropical japonica rice groups. The candidate population (CP) was composed of 99 F5-F7 lines derived from 36 crosses involving 32 accessions of TP. The two populations were genotyped with an average marker density of 4.8 per kb, with MAF 2.5%. Phenotypic traits considered included flowering time (FL), grain yield (GY) and nitrogen balance index (NI) under conventional irrigation (CI) and aerobic system (AS). Phenotypes were modeled using two statistical regression methods: genomic best linear unbiased prediction (GBLUP) and reproducing kernel Hilbert Space (RKHS). The models were tested with three incidence matrixes corresponding to densities of 4.8, 9.5 and 13.8 marker per kb, and to linkage disequilibrium (LD) thresholds of r2≤1, r²<0.98 and r²<0.81 to investigate effect of the method and level of LD. Results of interpopulation prediction in rice breeding provided accuracies of GEBV prediction reasonably high for GY (0.41; Sd=0.03) and for NI (0.36; Sd=0.04), low for FL (0.26; Sd = 0.07), that need to be optimized by exploring potential effect of population structure within both TP and CP. (Texte integral

Recent Developments in Understanding Two-dimensional Turbulence and the Nastrom-Gage Spectrum

Two-dimensional turbulence appears to be a more formidable problem than three-dimensional turbulence despite the numerical advantage of working with one less dimension. In the present paper we review recent numerical investigations of the phenomenology of two-dimensional turbulence as well as recent theoretical breakthroughs by various leading researchers. We also review efforts to reconcile the observed energy spectrum of the atmosphere (the spectrum) with the predictions of two-dimensional turbulence and quasi-geostrophic turbulence.Comment: Invited review; accepted by J. Low Temp. Phys.; Proceedings for Warwick Turbulence Symposium Workshop on Universal features in turbulence: from quantum to cosmological scales, 200

Quasilinear theory of the 2D Euler equation

We develop a quasilinear theory of the 2D Euler equation and derive an integro-differential equation for the evolution of the coarse-grained vorticity. This equation respects all the invariance properties of the Euler equation and conserves angular momentum in a circular domain and linear impulse in a channel. We show under which hypothesis we can derive a H-theorem for the Fermi-Dirac entropy and make the connection with statistical theories of 2D turbulence.Comment: 4 page

Scaling laws and vortex profiles in 2D decaying turbulence

We use high resolution numerical simulations over several hundred of turnover times to study the influence of small scale dissipation onto vortex statistics in 2D decaying turbulence. A self-similar scaling regime is detected when the scaling laws are expressed in units of mean vorticity and integral scale, as predicted by Carnevale et al., and it is observed that viscous effects spoil this scaling regime. This scaling regime shows some trends toward that of the Kirchhoff model, for which a recent theory predicts a decay exponent $\xi=1$. In terms of scaled variables, the vortices have a similar profile close to a Fermi-Dirac distribution.Comment: 4 Latex pages and 4 figures. Submitted to Phys. Rev. Let

Granularity-induced gapless superconductivity in NbN films: evidence of thermal phase fluctuations

Using a single coil mutual inductance technique, we measure the low temperature dependence of the magnetic penetration depth in superconducting NbN films prepared with similar critical temperatures around 16 K but with different microstructures. Only (100) epitaxial and weakly granular (100) textured films display the characteristic exponential dependence of conventional BCS s-wave superconductors. More granular (111) textured films exhibit a linear dependence, indicating a gapless state in spite of the s-wave gap. This result is quantitatively explained by a model of thermal phase fluctuations favored by the granular structure.Comment: 10 pages, 4 figures, to appear in Phys. Rev.