BadiRate Software

Podeu consultar l'article relacionat a: http://hdl.handle.net/2445/53350Podeu consultar la pàgina de desenvolupament del programari: http://www.ub.edu/softevol/badirate/BadiRate is a software package to estimate, within a phylogenetic context and by likelihood-based methods (or parsimony): (1) the gain, birth, death and innovation family turnover rates (2) most likely number of family members in internal nodes (3) families with turnover rates higher or lower than that estimated for the whole dat

Diversity of the nitrite reductase gene nirS in the sediment of a free-water surface constructed wetland

The diversity of the nitrite reductase gene nirS was studied in the bulk sediment of a free-water surface constructed wetland (FWS-CW) located next to the Empuriabrava wastewater treatment plant (WWTP), in Castelló d’Empúries (Girona, NE Spain). The study period extended from the inception of the treatment wetland, in June 1998, until March 1999 and comprised periods of relatively high nitrate and ammonium concentrations at the influent and low nitrate-removal efficiencies. To evaluate nirS diversity, partial gene sequences were obtained by cloning of the respective PCR products. Rarefaction curves based on DOTUR analyses of the deduced amino-acid sequences predicted a greater diversity of nirS genes in samples containing higher ammonium concentrations. Estimated Shannon-Weaver indices of the four cloned samples showed a positive relationship with the N-NH4 +/N-NO3− ratios measured at the FWS-CW inlet. Identities between the deduced amino-acid sequences and those previously deposited in public databases ranged from 72 to 97%. Phylogenetic analysis based on these deduced sequences grouped 165 nirS clones in seven main clusters according to high similarity indices. Up to 60% of the clones clustered together in a highly homogeneous group with little homologies to any sequence retrieved from cultured representatives. Moreover, prevailing environmental conditions appeared to select for particular denitrifying populations, e.g., with respect to ammonium load and nitrogen removal efficiencies. This observation is of particular interest for the management of treatment wetlands, in which only slight variations in the theoretical denitrification potential of the system can occur. [Int Microbiol 2007; 10(4): 253-260

Research Article HYPOGLYCEMIC EFFECT AND IN VITRO ANTIOXIDANT ACTIVITY OF THE DICHLOROMETHANE FRACTION FROM THE LEAVES OF FICUS ODORATA (BLANCO) MERR.

This study aimed to evaluate the hypoglycemic and antioxidant activity of the leaves of Ficus odorata. The methanolic crude extract was fractionated by liquid-liquid partitioning using organic solvents with increasing polarity. Four fractions were obtained such as, hexane, dichloromethane (DCM), ethyl acetate and water. Of the four fractions tested, DCM fraction yielded the highest amount of flavonoid content at 335.63 mg QE/g sample. TLC and HPLC analyses of DCM fraction revealed that quercetin may be present in the fraction. In acute oral toxicity test, zero mortality rate was observed after 14 days of treatment. Gross necropsies of selected rat organs were normal. Histopathological analyses of liver and kidneys were unremarkable. In hypoglycemic study, induction of diabetes was successfully completed in 28 days using single dose of streptozotocin (30 mg/kg body weight) and high fat diet (Srinivasan et al., 2005). Daily oral administration of DCM fraction showed that at a dose of 50 mg/kg (p<0.001) and 200 mg/Kg (p=0.002) produced significant decrease in their mean blood sugar after the 14-day treatment. The same effect was observed with the positive control at 10 mg/kg of glyburide (p<0.001). On the other hand, the results in the in vitro antioxidant activity showed that DCM fraction exhibited scavenging activity against hydroxyl radical and hydrogen peroxide with an IC50 value of 0.275 mg/mL and 4.954 mg/mL, respectively. The results indicate that DCM fraction from the leaves of Ficus odorata has potential hypoglycemic and antioxidan

Haematological and pathological findings of pigs experimentally inoculated with a Chilean isolate of porcine reproductive and respiratory syndrome virus

The aims of this study were to characterize the haematological and bone marrow changes, gross and microscopic lesions of pigs experimentally inoculated with the Chilean isolate of porcine reproductive and respiratory syndrome virus. Twelve 3-week-old pigs were divided in 4 groups of 3, one of which corresponded to the negative control group sacrificed at 0 days post-inoculation (dpi), and the 3 remaining groups corresponded to the inoculated pigs sacrificed at 7, 14 and 21 dpi. For each sampling period blood was collected for complete haemograme and at the necropsy time gross lesions were registered and samples for both bone marrow smears and histopathology were taken. The results of this study revealed haematological alterations characterized by a significant reduction (P<0.05) in the haematocrit and a significant increase (P<0.05) in the total leukocyte count associated with an increase in the monocytes and baciliforms. The bone marrow did not show significant variations in the ratio of myeloid to erythroid cells (P>0.05). At the same time, the gross lesions were mild and mainly characterized by the presence of conjunctivitis, periocular edema and a slight increase in the size of the lymph nodes. Microscopic lesions were characterized by the presence of interstitial pneumonia, depletion and necrosis in lymphoid organs, rhinitis, hepatitis, myocarditis and non-purulent encephalitis. These findings suggest that the Chilean isolate of the vPRRS to a strain with a low virulenc

DnaSP v5: A software for comprehensive analysis of DNA polymorphism data

Podeu consultar el programari a: http://hdl.handle.net/2445/53451DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser

Las células presentadoras de antígeno y su papel en el síndrome reproductivo y respiratorio porcino

Las células presentadoras de antígeno son aquellas células encargadas de capturar, procesar y presentar antígenos con la finalidad de lograr una respuesta inmune efectiva por parte del organismo. Su papel, como centinelas, es crucial durante el transcurso de diversas enfermedades infecciosas. El estudio de estas células tras la infección con el virus del Síndrome Reproductivo y Respiratorio Porcino nos da información para abordar nuevas estrategias de control frente a esta enfermedad.Antigen presenting cells are able to capture, process and present antigens in order to develop an effective immune response. The role of these cells during infectious diseases is crucial to control the disease. Thus, the study of these cells after the infection with Porcine Reproductive and Respiratory Syndrome Virus gives us useful information on how to control this disease