Imaging and Pathological Features of Percutaneous Cryosurgery on Normal Lung Evaluated in a Porcine Model

Background and objective Lung cancer is one of the most commonly occurring malignancies and frequent causes of death in the world. Cryoablation is a safe and alternative treatment for unresectable lung cancer. Due to the lung being gas-containing organ and different from solid organs such as liver and pancreas, it is difficult to achieve the freezing range of beyond the tumor edge 1 cm safety border. The aim of this study is to examine the effect of different numbers of freeze cycles on the effectiveness of cryoablation on normal lung tissue and to create an operation guideline that gives the best effect. Methods Six healthy Tibetan miniature pigs were given a CT scan and histological investigation after percutaneous cryosurgery. Cryoablation was performed as 2 cycles of 10 min of active freezing in the left lung; each freeze followed by a 5 min thaw. In the right lung, we performed the same 2 cycles of 5 min of freezing followed by 5 min of thawing. However, for the right lung, we included a third cycle of consisting of 10 min of freezing followed by 5 min of thawing. Three cryoprobes were inserted into the left lung and three cryoprobes in the right lung per animal, one in the upper and two in the lower lobe, so as to be well away from each other. Comparison under the same experimental condition was necessary. During the experiment, observations were made regarding the imaging change of ice-ball. The lungs were removed postoperatively at 3 intervals: 4 h, 3 d of postoperation and 7 d of postoperation, respectively, to view microscopic and pathological change. Results The ice-ball grew gradually in relation to the increase in time, and the increase in number of cycles. The size of the cryolesion (hypothesis necrotic area) in specimens, over time, became larger in size than the size of the ice-ball during operation, regardless of whether 2 or 3 freeze-thaw cycles were performed. The area of necrosis was gradually increased over the course of time. The hypothesis necrotic area was equal to necrosis area 3 d after cryosurgery. Conclusion Percutaneous cryoablation of the lung can achieve complete ablation of target tissue. The freezing technique may be different depending on the individual circumstances of each tumor. In technology, 3 freeze-thaw cycles are recommended, and the range of cryoablation’s effective diameter may be not necessarily beyond the tumor edge at least 1 cm safe border during cryosurgery

Construction of low density parity check codes without short cycles

With the rapid expansion of communication networks, there has been an increasing demand for efficient and reliable digital data transmission and storage systems. Many efficient codes have been developed. The LDPC code is one of them. In this thesis, the sum-product algorithm is used in the decoding of LDPC codes. Some schemes for encoding LDPC codes have been studied. In particular, two methods of producing regular H matrices have been attempted that include short cycles of length four with code rates of 0.5, and we present three schemes of finding regular H matrices which do not include short cycles of length four with code rate being 0.5. The effect of short cycles in the bipartite graph of regular LDPC codes has been considered. The simulation results show that the BER performances of regular H matrices that do not include short cycles of length four based on BPSK or 8PSK on AWGN channel is better than those of regular H matrices that include short cycles of length four. In conclusion, in order to obtain good performance with LDPC code, one should design H matrix related to bipartite graph without short cycles

Laser Ablation of Energetic Materials

The initiation of explosives by laser is a new initiation method. Compared with traditional initiation methods, laser initiation has the characteristics of high reliability and high safety. It can be used as one of the alternative technologies for future initiation device. A microscopic understanding of the complex physical and chemical processes involved in the reaction process is essential for laser initiation. Shock initiation technology of laser-driven flyer was studied. Several typical laser-driven flyer targets researches were introduced. Some significant characteristics including velocity and impact stress of flyers were tested via photonic Doppler velocimetry and polyvinylidene fluoride pressure sensor, respectively. Some types of flyers including Al and Cu single-layer flyers and CuO/Cu, CuO/Al, and CuO/Al/Cu multilayer flyers with relatively high velocities were used to initiate PETN explosive. In order to give a better understanding of the mechanism of laser interaction with typical energetic materials (RDX, HMX, TNT, and HNS), a time of flight mass spectrometer (TOFMS) was used to detect the positive ions and the negative ions were produced in the laser-induced dissociation processes. The influences of laser wavelength, the laser fluence, and the delay time of the decomposition process have been studied as well. The results may throw some light on the laser interaction mechanism of energetic materials

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL maps are derived through computational staining using a convolutional neural network trained to classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and correlation with overall survival. TIL map structural patterns were grouped using standard histopathological parameters. These patterns are enriched in particular T cell subpopulations derived from molecular measures. TIL densities and spatial structure were differentially enriched among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for the TCGA image archives with insights into the tumor-immune microenvironment

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN

Goal-Oriented Prompt Attack and Safety Evaluation for LLMs

Large Language Models (LLMs) presents significant priority in text understanding and generation. However, LLMs suffer from the risk of generating harmful contents especially while being employed to applications. There are several black-box attack methods, such as Prompt Attack, which can change the behaviour of LLMs and induce LLMs to generate unexpected answers with harmful contents. Researchers are interested in Prompt Attack and Defense with LLMs, while there is no publicly available dataset with high successful attacking rate to evaluate the abilities of defending prompt attack. In this paper, we introduce a pipeline to construct high-quality prompt attack samples, along with a Chinese prompt attack dataset called CPAD. Our prompts aim to induce LLMs to generate unexpected outputs with several carefully designed prompt attack templates and widely concerned attacking contents. Different from previous datasets involving safety estimation, we construct the prompts considering three dimensions: contents, attacking methods and goals. Especially, the attacking goals indicate the behaviour expected after successfully attacking the LLMs, thus the responses can be easily evaluated and analysed. We run several popular Chinese LLMs on our dataset, and the results show that our prompts are significantly harmful to LLMs, with around 70% attack success rate to GPT-3.5. CPAD is publicly available at https://github.com/liuchengyuan123/CPAD