Magnetic fields in circumstellar disks: The potential of Zeeman observations

Context. Recent high angular resolution polarimetric continuum observations of circumstellar disks provide new insights into their magnetic field. However, direct constraints are limited to the plane of sky component of the magnetic field. Observations of Zeeman split spectral lines are a potential approach to enhance these insights by providing complementary information. Aims. We investigate which constraints for magnetic fields in circumstellar disks can be obtained from Zeeman observations of the $113~\mathrm{GHz}$ CN lines. Furthermore, we analyze the requirements to perform these observations and their dependence on selected quantities. Methods. We simulate the Zeeman splitting with the radiative transfer (RT) code POLARIS (Reissl et al. 2016) extended by our Zeeman splitting RT extension ZRAD (Brauer et al. 2017), which is based on the line RT code Mol3D (Ober et al. 2015). Results. We find that Zeeman observations of the $113~\mathrm{GHz}$ CN lines provide significant insights into the magnetic field of circumstellar disks. However, with the capabilities of recent and upcoming instrument/observatories, even spatially unresolved observations would be challenging. Nevertheless, these observations are feasible for the most massive disks with a strong magnetic field and high abundance of CN/H. The most restrictive quantity is the magnetic field strength, which should be at least in the order of $\sim1~\mathrm{mG}$. In addition, the inclination of the disk should be around $60\deg$ to preserve the ability to derive the line-of-sight (LOS) magnetic field strength and to obtain a sufficiently high circularly polarized flux.Comment: 15 pages, 14 figure

Radiation Magnetohydrodynamics In Global Simulations Of Protoplanetary Disks

Our aim is to study the thermal and dynamical evolution of protoplanetary disks in global simulations, including the physics of radiation transfer and magneto-hydrodynamic (MHD) turbulence caused by the magneto-rotational instability. We develop a radiative transfer method based on the flux-limited diffusion approximation that includes frequency dependent irradiation by the central star. This hybrid scheme is implemented in the PLUTO code. The focus of our implementation is on the performance of the radiative transfer method. Using an optimized Jacobi preconditioned BiCGSTAB solver, the radiative module is three times faster than the MHD step for the disk setup we consider. We obtain weak scaling efficiencies of 70% up to 1024 cores. We present the first global 3D radiation MHD simulations of a stratified protoplanetary disk. The disk model parameters are chosen to approximate those of the system AS 209 in the star-forming region Ophiuchus. Starting the simulation from a disk in radiative and hydrostatic equilibrium, the magnetorotational instability quickly causes MHD turbulence and heating in the disk. For the disk parameters we use, turbulent dissipation heats the disk midplane and raises the temperature by about 15% compared to passive disk models. A roughly flat vertical temperature profile establishes in the disk optically thick region close to the midplane. We reproduce the vertical temperature profile with a viscous disk models for which the stress tensor vertical profile is flat in the bulk of the disk and vanishes in the disk corona. The present paper demonstrates for the first time that global radiation MHD simulations of turbulent protoplanetary disks are feasible with current computational facilities. This opens up the windows to a wide range of studies of the dynamics of protoplanetary disks inner parts, for which there are significant observational constraints.Comment: Accepted to A&

3D MHD Simulations of Planet Migration in Turbulent Stratified Disks

We performed 3D MHD simulations of planet migration in stratified disks using the Godunov code PLUTO, where the disk is turbulent due to the magnetorotational instability. We study the migration for planets with different planet-star mass ratios $q=M_{p}/M_{s}$. In agreement with previous studies, for the low-mass planet cases ($q=5\times10^{-6}$ and $10^{-5}$), migration is dominated by random fluctuations in the torque. For a Jupiter-mass planet $(q=M_{p}/M_{s}=10^{-3}$ for $M_{s}=1M_{\odot})$, we find a reduction of the magnetic stress inside the orbit of the planet and around the gap region. After an initial stage where the torque on the planet is positive, it reverses and we recover migration rates similar to those found in disks where the turbulent viscosity is modelled by an $\alpha$ viscosity. For the intermediate-mass planets ($q=5\times10^{-5}, 10^{-4}$ and $2\times10^{-4}$) we find a new and so far unexpected behavior. In some cases they experience sustained and systematic outwards migration for the entire duration of the simulation. For this case, the horseshoe region is resolved and torques coming from the corotation region can remain unsaturated due to the stresses in the disk. These stresses are generated directly by the magnetic field. The magnitude of the horseshoe drag can overcome the negative Lindblad contribution when the local surface density profile is flat or increasing outwards, which we see in certain locations in our simulations due to the presence of a zonal flow. The intermediate-mass planet is migrating radially outwards in locations where there is a positive gradient of a pressure bump (zonal flow).Comment: Accepted for publication in Ap

Gaps, Rings, and Non-Axisymmetric Structures in Protoplanetary Disks - From Simulations to ALMA Observations

Recent observations by the Atacama Large Millimeter/submillimeter Array (ALMA) of disks around young stars revealed distinct asymmetries in the dust continuum emission. In this work we want to study axisymmetric and non-axisymmetric structures, evocated by the magneto-rotational instability in the outer regions of protoplanetary disks. We combine the results of state-of-the-art numerical simulations with post-processing radiative transfer (RT) to generate synthetic maps and predictions for ALMA. We performed non-ideal global 3D MHD stratified simulations of the dead-zone outer edge using the FARGO MHD code PLUTO. The stellar and disk parameters are taken from a parameterized disk model applied for fitting high-angular resolution multi-wavelength observations of circumstellar disks. The 2D temperature and density profiles are calculated consistently from a given surface density profile and Monte-Carlo radiative transfer. The 2D Ohmic resistivity profile is calculated using a dust chemistry model. The magnetic field is a vertical net flux field. The resulting dust reemission provides the basis for the simulation of observations with ALMA. The fiducial model develops a large gap followed by a jump in surface density located at the dead-zone outer edge. The jump in density and pressure is strong enough to stop the radial drift of particles. In addition, we observe the generation of vortices by the Rossby wave instability (RWI) at the jumps location close to 60 AU. The vortices are steadily generated and destroyed at a cycle of 40 local orbits. The RT results and simulated ALMA observations predict the feasibility to observe such large scale structures appearing in magnetized disks without having a planet.Comment: Language update, added comments, added citations, in press. (A&A

The Radial Distribution of Dust Particles in the HL Tau Disk from ALMA and VLA Observations

Understanding planet formation requires one to discern how dust grows in protoplanetary disks. An important parameter to measure in disks is the maximum dust grain size present. This is usually estimated through measurements of the dust opacity at different millimeter wavelengths assuming optically thin emission and dust opacity dominated by absorption. However, Atacama Large Millimeter/submillimeter Array (ALMA) observations have shown that these assumptions might not be correct in the case of protoplanetary disks, leading to overestimation of particle sizes and to underestimation of the disk\u27s mass. Here, we present an analysis of high-quality ALMA and Very Large Array images of the HL Tau protoplanetary disk, covering a wide range of wavelengths, from 0.8 mm to 1 cm, and with a physical resolution of ~7.35 au. We describe a procedure to analyze a set of millimeter images without any assumption about the optical depth of the emission, and including the effects of absorption and scattering in the dust opacity. This procedure allows us to obtain the dust temperature, the dust surface density, and the maximum particle size at each radius. In the HL Tau disk, we found that particles have already grown to a few millimeters in size. We detect differences in the dust properties between dark and bright rings, with dark rings containing low dust density and small dust particles. Different features in the HL Tau disk seem to have different origins. Planet–disk interactions can explain substructure in the external half of the disk, but the internal rings seem to be associated with the presence of snow lines of several molecules

The VLA view of the HL Tau Disk - Disk Mass, Grain Evolution, and Early Planet Formation

The first long-baseline ALMA campaign resolved the disk around the young star HL Tau into a number of axisymmetric bright and dark rings. Despite the very young age of HL Tau these structures have been interpreted as signatures for the presence of (proto)planets. The ALMA images triggered numerous theoretical studies based on disk-planet interactions, magnetically driven disk structures, and grain evolution. Of special interest are the inner parts of disks, where terrestrial planets are expected to form. However, the emission from these regions in HL Tau turned out to be optically thick at all ALMA wavelengths, preventing the derivation of surface density profiles and grain size distributions. Here, we present the most sensitive images of HL Tau obtained to date with the Karl G. Jansky Very Large Array at 7.0 mm wavelength with a spatial resolution comparable to the ALMA images. At this long wavelength the dust emission from HL Tau is optically thin, allowing a comprehensive study of the inner disk. We obtain a total disk dust mass of 0.001 - 0.003 Msun, depending on the assumed opacity and disk temperature. Our optically thin data also indicate fast grain growth, fragmentation, and formation of dense clumps in the inner densest parts of the disk. Our results suggest that the HL Tau disk may be actually in a very early stage of planetary formation, with planets not already formed in the gaps but in the process of future formation in the bright rings.Comment: Accepted by The Astrophysical Journal Letter

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer

Gene fusions are common cancer-causing mutations, but the molecular principles by which fusion protein products affect interaction networks and cause disease are not well understood. Here, we perform an integrative analysis of the structural, interactomic, and regulatory properties of thousands of putative fusion proteins. We demonstrate that genes that form fusions (i.e., parent genes) tend to be highly connected hub genes, whose protein products are enriched in structured and disordered interaction-mediating features. Fusion often results in the loss of these parental features and the depletion of regulatory sites such as post-translational modifications. Fusion products disproportionately connect proteins that did not previously interact in the protein interaction network. In this manner, fusion products can escape cellular regulation and constitutively rewire protein interaction networks. We suggest that the deregulation of central, interaction-prone proteins may represent a widespread mechanism by which fusion proteins alter the topology of cellular signaling pathways and promote cancer

The properties of the inner disk around HL Tau: Multi-wavelength modeling of the dust emission

We conducted a detailed radiative transfer modeling of the dust emission from the circumstellar disk around HL Tau. The goal of our study is to derive the surface density profile of the inner disk and its structure. In addition to the Atacama Large Millimeter/submillimeter Array images at Band 3 (2.9mm), Band 6 (1.3mm), and Band 7 (0.87mm), the most recent Karl G. Jansky Very Large Array (VLA) observations at 7mm were included in the analysis. A simulated annealing algorithm was invoked to search for the optimum model. The radiative transfer analysis demonstrates that most radial components (i.e., >6AU) of the disk become optically thin at a wavelength of 7mm, which allows us to constrain, for the first time, the dust density distribution in the inner region of the disk. We found that a homogeneous grain size distribution is not sufficient to explain the observed images at different wavelengths simultaneously, while models with a shallower grain size distribution in the inner disk work well. We found clear evidence that larger grains are trapped in the first bright ring. Our results imply that dust evolution has already taken place in the disk at a relatively young (i.e., ~1Myr) age. We compared the midplane temperature distribution, optical depth, and properties of various dust rings with those reported previously. Using the Toomre parameter, we briefly discussed the gravitational instability as a potential mechanism for the origin of the dust clump detected in the first bright ring via the VLA observations.Comment: Accepted for publication in A&A (10 pages