A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens

BACKGROUND: Excess fat content in chickens has a negative impact on poultry production. The discovery of QTL associated with fat deposition in the carcass allows the identification of positional candidate genes (PCGs) that might regulate fat deposition and be useful for selection against excess fat content in chicken's carcass. This study aimed to estimate genomic heritability coefficients and to identify QTLs and PCGs for abdominal fat (ABF) and skin (SKIN) traits in a broiler chicken population, originated from the White Plymouth Rock and White Cornish breeds. RESULTS: ABF and SKIN are moderately heritable traits in our broiler population with estimates ranging from 0.23 to 0.33. Using a high density SNP panel (355,027 informative SNPs), we detected nine unique QTLs that were associated with these fat traits. Among these, four QTL were novel, while five have been previously reported in the literature. Thirteen PCGs were identified that might regulate fat deposition in these QTL regions: JDP2, PLCG1, HNF4A, FITM2, ADIPOR1, PTPN11, MVK, APOA1, APOA4, APOA5, ENSGALG00000000477, ENSGALG00000000483, and ENSGALG00000005043. We used sequence information from founder animals to detect 4843 SNPs in the 13 PCGs. Among those, two were classified as potentially deleterious and two as high impact SNPs. CONCLUSIONS: This study generated novel results that can contribute to a better understanding of fat deposition in chickens. The use of high density array of SNPs increases genome coverage and improves QTL resolution than would have been achieved with low density. The identified PCGs were involved in many biological processes that regulate lipid storage. The SNPs identified in the PCGs, especially those predicted as potentially deleterious and high impact, may affect fat deposition. Validation should be undertaken before using these SNPs for selection against carcass fat accumulation and to improve feed efficiency in broiler chicken production.fals

Effect of selection for productive traits in broiler maternal lines on embryo development

This study used 300 females and 30 males with 36 weeks of age from the selected PP and control PPc maternal broiler lines. PP has been selected for heavy body weight (PC) and high egg production for eight generations. Fertile eggs were collected and weighed individually for 4 periods of 5 consecutive days at two-week intervals. In each period, a total of 960 eggs/line were identified and separated in groups of 240 eggs, and stored for later incubation. Embryo weight (PE) was evaluated at 9 (P9), 11 (P11), 13 (P13), 15 (P15), 17 (P17) and 21 (P21) days of incubation. The objective was to estimate the effect of selection on embryo development. Egg weight (PO) was similar between the two lines. The differences in PE were significant from P15 on, resulting in 1.9g of difference in the chick weight, indicating correlated genetic changes in the embryo development, which can be credited to the selection for PC. Changes in PE while PO was kept unaltered modified the correlations between these two traits. Differences were significant from P13 on and estimated correlations for P21 were 0.72 and 0.70 for PP and PPc, respectively. Chick weight corresponded to 70.91% (PP) and 68.48% (PPc) of egg weight. The estimated increase in P21 that resulted from the increase of 1.0g in PO was 0.71 in PP and 0.68g in PPc

Effect of selection for productive traits in broiler maternal lines on embryo development

This study used 300 females and 30 males with 36 weeks of age from the selected PP and control PPc maternal broiler lines. PP has been selected for heavy body weight (PC) and high egg production for eight generations. Fertile eggs were collected and weighed individually for 4 periods of 5 consecutive days at two-week intervals. In each period, a total of 960 eggs/line were identified and separated in groups of 240 eggs, and stored for later incubation. Embryo weight (PE) was evaluated at 9 (P9), 11 (P11), 13 (P13), 15 (P15), 17 (P17) and 21 (P21) days of incubation. The objective was to estimate the effect of selection on embryo development. Egg weight (PO) was similar between the two lines. The differences in PE were significant from P15 on, resulting in 1.9g of difference in the chick weight, indicating correlated genetic changes in the embryo development, which can be credited to the selection for PC. Changes in PE while PO was kept unaltered modified the correlations between these two traits. Differences were significant from P13 on and estimated correlations for P21 were 0.72 and 0.70 for PP and PPc, respectively. Chick weight corresponded to 70.91% (PP) and 68.48% (PPc) of egg weight. The estimated increase in P21 that resulted from the increase of 1.0g in PO was 0.71 in PP and 0.68g in PPc

Análise de agrupamento de diferentes densidades de marcadores no mapeamento genético por varredura genômica

A simulação tem contribuído para o avanço da genômica nas diversas áreas do melhoramento genético. Foram simulados mapeamentos genéticos utilizando diferentes densidades de marcadores para estimar os valores fenotípicos na seleção assistida por marcadores (SAM), em características quantitativas com valores de herdabilidade de 0,10; 0,40; e 0,70. Procedeu-se a análise de agrupamento com os desempenhos fenotípicos, cuja finalidade foi obter estruturas de classificação entre as densidades visando à otimização na detecção de QTL. O sistema de simulação genética (Genesys) foi utilizado para três genomas (cada qual constituído de uma única característica cuja distinção estava no valor da herdabilidade) e para as populações base e inicial. Cada população inicial foi submetida à seleção assistida por marcadores por 20 gerações consecutivas, em que os genitores selecionados acasalavam-se seletivamente entre os melhores e os piores. O mapeamento empregando de média a alta densidade de marcadores assinalou eficiência nos progressos fenotípicos obtidos com a SAM. Menores quantidades de marcadores são requeridas para manter determinado poder de detecção de QTL à medida que se eleva a magnitude da herdabilidade. A análise de agrupamento indicou otimização e correspondência nos incrementos fenotípicos ao admitir as densidades de 4 e 6 cM; 4, 6, 8 e 10 cM; e 6 e 8 cM para as herdabilidades de 0,10; 0,40; e 0,70, respectivamente

Influence of feeding time on sexual maturity and carcass composition in female broiler breeders

One thousand two hundred and ninety six Arbor Acres females and 144 males were used to study the influence of feeding time on sexual maturity and carcass composition. Treatments were: T1 = feeding at 6:30 am, T2 = 50% feeding at 6:30 am and 50% at 3:30 pm (dual), T3 = feeding at 11:00 am, T4 = feeding at 3:30 pm. Nutrition and management were as recommended to the commercial line. Variables studied were: sexual maturity at 5% production (SM), mean egg production percentage (PEP) body weight (BW), carcass composition, tibia weight (TIBW) and tibia calcium (Ca) and phosphorus (P) contents. Analysis of variance was used, and the means were compared using Student's t test. T2 females reached SM at 25.92 weeks, which was earlier (p<0.01) than the other treatments. PEP was greater (p<0.01) for T1 and T2 than for the other treatments. BW was greater in T1 and smaller in T4 (p<0.05) than in the other treatments. TIBW was greater in T3 than in T1 and T2 (p<0.05), with no effect (p>0.10) on carcass dry matter (DM), ether extract (EE), crude protein (CP) and ash (ASH). DM, EE, TIBW, Ca and P increased (p<0.05) whereas CP and ASH decreased with age. Time of feeding influenced body weight, but not carcass composition. Hens fed twice a day had earlier sexual maturity and similar egg production compared to those fed once at 6:30 am