4,000 research outputs found
Thermodynamics of phase transition in higher dimensional AdS black holes
We investigate the thermodynamics of phase transition for
dimensional Reissner Nordstrom (RN)-AdS black holes using a grand canonical
ensemble. This phase transition is characterized by a discontinuity in specific
heat. The phase transition occurs from a lower mass black hole with negative
specific heat to a higher mass black hole with positive specific heat. By
exploring Ehrenfest's scheme we show that this is a second order phase
transition. Explicit expressions for the critical temperature and critical mass
are derived. In appropriate limits the results for dimensional
Schwarzschild AdS black holes are obtained.Comment: LaTex, 11 pages, 5 figures, To appear in JHE
The Bregman chord divergence
Distances are fundamental primitives whose choice significantly impacts the
performances of algorithms in machine learning and signal processing. However
selecting the most appropriate distance for a given task is an endeavor.
Instead of testing one by one the entries of an ever-expanding dictionary of
{\em ad hoc} distances, one rather prefers to consider parametric classes of
distances that are exhaustively characterized by axioms derived from first
principles. Bregman divergences are such a class. However fine-tuning a Bregman
divergence is delicate since it requires to smoothly adjust a functional
generator. In this work, we propose an extension of Bregman divergences called
the Bregman chord divergences. This new class of distances does not require
gradient calculations, uses two scalar parameters that can be easily tailored
in applications, and generalizes asymptotically Bregman divergences.Comment: 10 page
Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3.
CC chemokine ligand 5 (CCL5) and CCL3 are critical for immune surveillance and inflammation. Consequently, they are linked to the pathogenesis of many inflammatory conditions and are therapeutic targets. Oligomerization and glycosaminoglycan (GAG) binding of CCL5 and CCL3 are vital for the functions of these chemokines. Our structural and biophysical analyses of human CCL5 reveal that CCL5 oligomerization is a polymerization process in which CCL5 forms rod-shaped, double-helical oligomers. This CCL5 structure explains mutational data and offers a unified mechanism for CCL3, CCL4, and CCL5 assembly into high-molecular-weight, polydisperse oligomers. A conserved, positively charged BBXB motif is key for the binding of CC chemokines to GAG. However, this motif is partially buried when CCL3, CCL4, and CCL5 are oligomerized; thus, the mechanism by which GAG binds these chemokine oligomers has been elusive. Our structures of GAG-bound CCL5 and CCL3 oligomers reveal that these chemokine oligomers have distinct GAG-binding mechanisms. The CCL5 oligomer uses another positively charged and fully exposed motif, KKWVR, in GAG binding. However, residues from two partially buried BBXB motifs along with other residues combine to form a GAG-binding groove in the CCL3 oligomer. The N termini of CC chemokines are shown to be involved in receptor binding and oligomerization. We also report an alternative CCL3 oligomer structure that reveals how conformational changes in CCL3 N termini profoundly alter its surface properties and dimer-dimer interactions to affect GAG binding and oligomerization. Such complexity in oligomerization and GAG binding enables intricate, physiologically relevant regulation of CC chemokine functions
Extended phase space thermodynamics for charged and rotating black holes and Born-Infeld vacuum polarization
We investigate the critical behaviour of charged and rotating AdS black holes
in d spacetime dimensions, including effects from non-linear electrodynamics
via the Born-Infeld action, in an extended phase space in which the
cosmological constant is interpreted as thermodynamic pressure. For
Reissner-Nordstrom black holes we find that the analogy with the Van der Walls
liquid-gas system holds in any dimension greater than three, and that the
critical exponents coincide with those of the Van der Waals system. We find
that neutral slowly rotating black holes in four space-time dimensions also
have the same qualitative behaviour. However charged and rotating black holes
in three spacetime dimensions do not exhibit critical phenomena. For
Born-Infeld black holes we define a new thermodynamic quantity B conjugate to
the Born-Infeld parameter b that we call Born-Infeld vacuum polarization. We
demonstrate that this quantity is required for consistency of both the first
law of thermodynamics and the corresponding Smarr relation.Comment: 23 pages, 32 figures, v2: minor changes, upgraded reference
A two-year participatory intervention project with owners to reduce lameness and limb abnormalities in working horses in Jaipur, India
Participatory methods are increasingly used in international human development, but scientific evaluation of their efficacy versus a control group is rare. Working horses support families in impoverished communities. Lameness and limb abnormalities are highly prevalent in these animals and a cause for welfare concern. We aimed to stimulate and evaluate improvements in lameness and limb abnormalities in horses whose owners took part in a 2-year participatory intervention project to reduce lameness (PI) versus a control group (C) in Jaipur, India.In total, 439 owners of 862 horses participated in the study. PI group owners from 21 communities were encouraged to meet regularly to discuss management and work practices influencing lameness and poor welfare and to track their own progress in improving these. Lameness examinations (41 parameters) were conducted at the start of the study (Baseline), and after 1 year and 2 years. Results were compared with control horses from a further 21 communities outside the intervention. Of the 149 horses assessed on all three occasions, PI horses showed significantly (P<0.05) greater improvement than C horses in 20 parameters, most notably overall lameness score, measures of sole pain and range of movement on limb flexion. Control horses showed slight but significantly greater improvements in four parameters, including frog quality in fore and hindlimbs.This participatory intervention succeeded in improving lameness and some limb abnormalities in working horses, by encouraging changes in management and work practices which were feasible within owners’ socioeconomic and environmental constraints. Demonstration of the potentially sustainable improvements achieved here should encourage further development of participatory intervention approaches to benefit humans and animals in other contexts
Complexity without chaos: Plasticity within random recurrent networks generates robust timing and motor control
It is widely accepted that the complex dynamics characteristic of recurrent
neural circuits contributes in a fundamental manner to brain function. Progress
has been slow in understanding and exploiting the computational power of
recurrent dynamics for two main reasons: nonlinear recurrent networks often
exhibit chaotic behavior and most known learning rules do not work in robust
fashion in recurrent networks. Here we address both these problems by
demonstrating how random recurrent networks (RRN) that initially exhibit
chaotic dynamics can be tuned through a supervised learning rule to generate
locally stable neural patterns of activity that are both complex and robust to
noise. The outcome is a novel neural network regime that exhibits both
transiently stable and chaotic trajectories. We further show that the recurrent
learning rule dramatically increases the ability of RRNs to generate complex
spatiotemporal motor patterns, and accounts for recent experimental data
showing a decrease in neural variability in response to stimulus onset
Search for Axionlike and Scalar Particles with the NA64 Experiment
We carried out a model-independent search for light scalar (s) and
pseudoscalar axionlike (a) particles that couple to two photons by using the
high-energy CERN SPS H4 electron beam. The new particles, if they exist, could
be produced through the Primakoff effect in interactions of hard bremsstrahlung
photons generated by 100 GeV electrons in the NA64 active dump with virtual
photons provided by the nuclei of the dump. The a(s) would penetrate the
downstream HCAL module, serving as shielding, and would be observed either
through their decay in the rest of the HCAL detector or
as events with large missing energy if the a(s) decays downstream of the HCAL.
This method allows for the probing the a(s) parameter space, including those
from generic axion models, inaccessible to previous experiments. No evidence of
such processes has been found from the analysis of the data corresponding to
electrons on target allowing to set new limits on the
-coupling strength for a(s) masses below 55 MeV.Comment: This publication is dedicated to the memory of our colleague Danila
Tlisov. 7 pages, 5 figures, revised version accepted for publication in Phys.
Rev. Let
Prognostic significance of the expression of GFRα1, GFRα3 and Syndecan-3, Proteins binding ARTEMIN, In mammary carcinoma
10.1186/1471-2407-13-34BMC Cancer13-BCMA
Modulation of enhancer looping and differential gene targeting by Epstein-Barr virus transcription factors directs cellular reprogramming
Epstein-Barr virus (EBV) epigenetically reprogrammes B-lymphocytes to drive immortalization and facilitate viral persistence. Host-cell transcription is perturbed principally through the actions of EBV EBNA 2, 3A, 3B and 3C, with cellular genes deregulated by specific combinations of these EBNAs through unknown mechanisms. Comparing human genome binding by these viral transcription factors, we discovered that 25% of binding sites were shared by EBNA 2 and the EBNA 3s and were located predominantly in enhancers. Moreover, 80% of potential EBNA 3A, 3B or 3C target genes were also targeted by EBNA 2, implicating extensive interplay between EBNA 2 and 3 proteins in cellular reprogramming. Investigating shared enhancer sites neighbouring two new targets (WEE1 and CTBP2) we discovered that EBNA 3 proteins repress transcription by modulating enhancer-promoter loop formation to establish repressive chromatin hubs or prevent assembly of active hubs. Re-ChIP analysis revealed that EBNA 2 and 3 proteins do not bind simultaneously at shared sites but compete for binding thereby modulating enhancer-promoter interactions. At an EBNA 3-only intergenic enhancer site between ADAM28 and ADAMDEC1 EBNA 3C was also able to independently direct epigenetic repression of both genes through enhancer-promoter looping. Significantly, studying shared or unique EBNA 3 binding sites at WEE1, CTBP2, ITGAL (LFA-1 alpha chain), BCL2L11 (Bim) and the ADAMs, we also discovered that different sets of EBNA 3 proteins bind regulatory elements in a gene and cell-type specific manner. Binding profiles correlated with the effects of individual EBNA 3 proteins on the expression of these genes, providing a molecular basis for the targeting of different sets of cellular genes by the EBNA 3s. Our results therefore highlight the influence of the genomic and cellular context in determining the specificity of gene deregulation by EBV and provide a paradigm for host-cell reprogramming through modulation of enhancer-promoter interactions by viral transcription factors
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