Breeding potential of the basmati rice germplasm under water stress condition

Eight parents were selected on the basis of phenotypic and genotypic screening for the development of F1. All the possible combinations were made between the parents excluding reciprocals in diallel mating design. Data were analyzed by using Hayman graphical approach and Griffing’s approach to study the genetics of the parents and their F1 hybrids. Based on the genetic component analysis, both additive and non-additive components appeared which is important in the inheritance of most of the traits. Both additive and dominance type of gene action were found important in inheritance for different traits under study. Most of the traits showed constant gene action in both environments, but the gene action of some traits was affected by the environment. Morphological traits like plant height, productive tillers per plant and 1000 seed weight showed over dominance type of gene action in both environments (control and drought environments), while seeds per panicle and seed length width ratio showed this type of gene action only in drought conditions. The seeds per panicle and length width ratio showed additive type of gene action with partial dominance only in normal irrigation conditions. From Griffing analysis, genotypes CB-17, CB-32 and Basmati-198 were found to be good general combiners for productive tillers per plant, primary branches per panicle and yield per plant, especially under water stress condition. Also, maximum specific combining ability was found in Basmati-198 × CB-17 for productive tillers per plant, Basmati-198 × CB-42 for primary branches per panicle and CB-32 × CB-14 for yield per plant.Key words: Oryza sativa L., gene action, combining ability, stress, yield traits

Core Gene Expression and Association of Genotypes with Viral Load in Hepatitis C Virus (HCV) - Infected Patients in Punjab, Pakistan

Purpose: To determine genotypic distribution, ribonucleic acid (RNA) RNA viral load and express core gene from Hepatitis C Virus (HCV) infected patients in Punjab, Pakistan.Methods: A total of 1690 HCV RNA positive patients were included in the study. HCV genotyping was tested by type-specific genotyping assay, viral load, by real time polymerase chain reaction (PCR) and HCV core protein was expressed in E. coli. Antigenicity of core protein was confirmed by enzyme-linked immunosorbant assay (ELISA).Results: Out of total 1690 serum samples, type-specific PCR fragments were observed in 1482 (87.69 %) of the samples. In both genders, genotype 3a (55.44 %) was most prevalent followed by 3b (15.03 %), 1a (6.98 %) and 1b (3.14 %). Regionally, genotype 3a occurred most frequently in Jaranwala (59.72 %). Patients infected with genotype 3 had pre-treatment viral load values of 52.56, 15.79 and 31.65 %, while patients infected by other genotypes showed viral load values of 13.43, 35.27 and 51.3 % for low, intermediate and high categories of viral load, respectively. ELISA showed that core protein possessed greater antigenicity.Conclusion: HCV genotype 3a is the most prevalent genotype in Punjab, although the distribution of HCV genotypes in eight cities of Punjab was not uniform. HCV core protein used to develop local screening assays may be more effective than current commercial assays.Keywords: Hepatitis C, Antigenicity, Genotyping, Viral load, Core gen

The New Standard in Town: An Updated Look at Computer-Aided Surgery Metrology

Computer-aided surgery capabilities for arthroplasty interventions emerged in the late 1990s with limited capabilities and use in the field. The goal of computer-aided surgery in the field of arthroplasty remains to reduce the need for excessive drilling tissue damage to the surgical site by reducing the need for cutting guides and related jigs. In order to assess the capabilities of computer-aided surgery systems in terms of both their accuracy and precision, the development and adherence to an industry standard for testing is necessary. A phantom device with divots of a known coordinate location was used in conjunction with proprietary software to assess the accuracy and precision of the complete surgical system. Measured coordinate data of a single point using the proprietary software was transformed according to the balloted ASTM standard for the generation of an accuracy and precision report. Results indicate 0.255 mm accuracy and sub-millimeter precision under conditions most similar to an operating room. Functional extreme tests indicate a loss of performance, leading to maximum decreased accuracy of 1.71 mm during standard orientation and 4.32 mm during extreme orientation of the phantom. The results suggest the tracking and software system meet manufacturer data under standard orientation and location conditions yet experience an expected significant loss of ability in extreme conditions. These loses in capability may lead to inaccurate alignment of tools and implants when using the proprietary computer-aided surgery software. Additional research is needed to determine the effect of larger reference frames with additional tracking points. Additionally, development of software to limit data return when near functional extremes will improve ease of use of the system.https://digitalcommons.unmc.edu/surp2022/1015/thumbnail.jp

Measurement of the inclusive and dijet cross-sections of b-jets in pp collisions at sqrt(s) = 7 TeV with the ATLAS detector

The inclusive and dijet production cross-sections have been measured for jets containing b-hadrons (b-jets) in proton-proton collisions at a centre-of-mass energy of sqrt(s) = 7 TeV, using the ATLAS detector at the LHC. The measurements use data corresponding to an integrated luminosity of 34 pb^-1. The b-jets are identified using either a lifetime-based method, where secondary decay vertices of b-hadrons in jets are reconstructed using information from the tracking detectors, or a muon-based method where the presence of a muon is used to identify semileptonic decays of b-hadrons inside jets. The inclusive b-jet cross-section is measured as a function of transverse momentum in the range 20 < pT < 400 GeV and rapidity in the range |y| < 2.1. The bbbar-dijet cross-section is measured as a function of the dijet invariant mass in the range 110 < m_jj < 760 GeV, the azimuthal angle difference between the two jets and the angular variable chi in two dijet mass regions. The results are compared with next-to-leading-order QCD predictions. Good agreement is observed between the measured cross-sections and the predictions obtained using POWHEG + Pythia. MC@NLO + Herwig shows good agreement with the measured bbbar-dijet cross-section. However, it does not reproduce the measured inclusive cross-section well, particularly for central b-jets with large transverse momenta.Comment: 10 pages plus author list (21 pages total), 8 figures, 1 table, final version published in European Physical Journal

Effects of river water and salinity on the toxicity of deltamethrin to freshwater shrimp, cladoceran, and fish

Deltamethrin is a pyrethroid insecticide used extensively to control invertebrate pests on cotton and other crops. It is acutely toxic to nontarget aquatic organisms, but existing toxicity data are mostly from toxicity tests using purified laboratory water that differs greatly from the turbid, high-conductivity rivers in the cotton-growing regions of Australia. The aim of this study was to determine whether the water quality variables conductivity, suspended particles, and dissolved organic matter alter the toxicity of deltamethrin to freshwater crustaceans and a fish. We tested three Australian native species: a cladoceran (Ceriodaphnia cf. dubia), a freshwater shrimp (Paratya australiensis), and larvae of the eastern rainbow fish (Melanotaenia duboulayi). Conductivity of the test solutions ranged from 200 to 750 μS/cm, but such changes did not modify the toxicity of deltamethrin to any of the test species. However, the toxicity of deltamethrin to C. cf. dubia and P. australiensis in river water was significantly decreased (1.8-fold to 6.3-fold reduction) compared to that in laboratory water. Variability in the toxicity data limited our ability to detect differences between laboratory and river water for M. duboulayi. Despite reductions in toxicity in natural waters, deltamethrin remained highly toxic [all L(E)C50 values <0.26 μg/L] to all organisms tested; thus, further investigation of the hazard of deltamethrin is warranted. © 2008 Springer Science+Business Media, LLC

Screening of systemic fungicides and biochemicals against seed borne mycoflora associated with Momordica charantia

Study of seed borne fungi associated with bitter gourd seeds were conducted under in vitro condition in Department of Plant Pathology, Bahauddin Zakariya University, Multan, Pakistan. Two hundred (200) seed samples of Momordica charantia (bitter gourd) were collected from southern regions of Punjab province (Multan, Khanewal and Bahawalpur). Six fungal species were isolated out of which Aspergillus flavus showed highest percentage that is, 27.3% followed by Rhizopus stolonifer 17.98%, Alternaria alternata 13.34%, Aspergillus niger 5.23%, Myrothecium roridum 7.37% and Fusarium solani 6.69%. More number of fungi was observed by using blotter paper technique when compared with agar plate method. Of the three systemic fungicides used include ridomil gold MZ, bavistin, and score; and two low cost chemicals such as salicylic acid and boric acid. Ridomil gold MZ gave good results at all concentrations (20, 30 and 40 mg/10 ml) against all the isolated fungi compared with other fungicides. Salicyclic acid gave the best results against isolated fungi compared to boric acid.Key words: Myrothecium roridum, bitter gourd, salicyclic acid, southern Punjab, bavistin, Pakistan

An evidence for surface expression of an immunogenic epitope of sarcoplasmic/endoplasmic reticulum calcium-ATPase2a on antigen-presenting cells from naive mice in the mediation of autoimmune myocarditis

We recently reported identification of sarcoplasmic/endoplasmic reticulum calcium-ATPase2a (SERCA2a) 971–990, which induces atrial myocarditis by generating autoreactive T cells in A/J mice. However, it was unknown how antigen-sensitized T cells could recognize SERCA2a 971–990, since SERCA2a-expression is confined to an intracellular compartment. In this report, we present evidence that antigen-presenting cells (APCs) from lymphoid and non-lymphoid organs in naïve animals present SERCA2a 971–990 and stimulate antigen-specific T cells. Using major histocompatibility complex (MHC) class II dextramers for SERCA2a 971–990, we created a panel of T cell hybridomas and demonstrated that splenocytes from naïve A/J mice stimulated the hybridoma cells without exogenous supplementation of SERCA2a 971–990. We then recapitulated this phenomenon by using SERCA2a 971–990-specific primary T cells, verifying that the T cell responses were MHC-restricted. Furthermore, SERCA2a 971–990-sensitzed T cells exposed to APCs from naïve mice were found to produce the inflammatory cytokines interferon-γ, granulocyte macrophage colony stimulating factor, and interleukin-17A, which are implicated in the induction of myocarditis. Finally, while T cells exposed to mononuclear cells (MNCs) obtained from heart and liver also responded similarly to splenocytes, endothelial cells (ECs) generated from the corresponding organs displayed opposing effects, in that the proliferative responses were suppressed with the heart ECs, but not with the liver ECs. Taken together, our data suggest that the surface expression of SERCA2a 971–990 by naïve APCs can potentially trigger pathogenic autoreactive T cell responses under conditions of autoimmunity, which may have implications in endothelial dysfunction