Hydro-dynamical models for the chaotic dripping faucet

We give a hydrodynamical explanation for the chaotic behaviour of a dripping faucet using the results of the stability analysis of a static pendant drop and a proper orthogonal decomposition (POD) of the complete dynamics. We find that the only relevant modes are the two classical normal forms associated with a Saddle-Node-Andronov bifurcation and a Shilnikov homoclinic bifurcation. This allows us to construct a hierarchy of reduced order models including maps and ordinary differential equations which are able to qualitatively explain prior experiments and numerical simulations of the governing partial differential equations and provide an explanation for the complexity in dripping. We also provide a new mechanical analogue for the dripping faucet and a simple rationale for the transition from dripping to jetting modes in the flow from a faucet.Comment: 16 pages, 14 figures. Under review for Journal of Fluid Mechanic

Spatial control of irreversible protein aggregation

Liquid cellular compartments spatially segregate from the cytoplasm and can regulate aberrant protein aggregation, a process linked to several medical conditions, including Alzheimer's and Parkinson's diseases. Yet the mechanisms by which these droplet-like compartments affect protein aggregation remain unknown. Here, we combine kinetic theory of protein aggregation and liquid-liquid phase separation to study the spatial control of irreversible protein aggregation in the presence of liquid compartments. We find that, even for weak interactions between the compartment constituents and the aggregating monomers, aggregates are strongly enriched inside the liquid compartment relative to the surrounding cytoplasm. We show that this enrichment is caused by a positive feedback mechanism of aggregate nucleation and growth which is mediated by a flux maintaining the phase equilibrium between the compartment and the cytoplasm. Our model predicts that the compartment volume that maximizes aggregate enrichment in the compartment is determined by the reaction orders of aggregate nucleation. The underlying mechanism of aggregate enrichment could be used to confine cytotoxic protein aggregates inside droplet-like compartments suggesting potential new avenues against aberrant protein aggregation. Our findings could also represent a common mechanism for the spatial control of irreversible chemical reactions in general

Transitions to Nematic states in homogeneous suspensions of high aspect ratio magnetic rods

Isotropic-Nematic and Nematic-Nematic transitions from a homogeneous base state of a suspension of high aspect ratio, rod-like magnetic particles are studied for both Maier-Saupe and the Onsager excluded volume potentials. A combination of classical linear stability and asymptotic analyses provides insight into possible nematic states emanating from both the isotropic and nematic non-polarized equilibrium states. Local analytical results close to critical points in conjunction with global numerical results (Bhandar, 2002) yields a unified picture of the bifurcation diagram and provides a convenient base state to study effects of external orienting fields.Comment: 3 Figure

Dynamics of evaporative colloidal patterning

Drying suspensions often leave behind complex patterns of particulates, as might be seen in the coffee stains on a table. Here we consider the dynamics of periodic band or uniform solid film formation on a vertical plate suspended partially in a drying colloidal solution. Direct observations allow us to visualize the dynamics of the band and film deposition, and the transition in between when the colloidal concentration is varied. A minimal theory of the liquid meniscus motion along the plate reveals the dynamics of the banding and its transition to the filming as a function of the ratio of deposition and evaporation rates. We also provide a complementary multiphase model of colloids dissolved in the liquid, which couples the inhomogeneous evaporation at the evolving meniscus to the fluid and particulate flows and the transition from a dilute suspension to a porous plug. This allows us to determine the concentration dependence of the bandwidth and the deposition rate. Together, our findings allow for the control of drying-induced patterning as a function of the colloidal concentration and evaporation rate.Comment: 11 pages, 7 figures, 2 table

Discovering Communities through Friendship

We introduce a new method for detecting communities of arbitrary size in an undirected weighted network. Our approach is based on tracing the path of closest‐friendship between nodes in the network using the recently proposed Generalized Erds Numbers. This method does not require the choice of any arbitrary parameters or null models, and does not suffer from a system‐size resolution limit. Our closest‐friend community detection is able to accurately reconstruct the true network structure for a large number of real world and artificial benchmarks, and can be adapted to study the multi‐level structure of hierarchical communities as well. We also use the closeness between nodes to develop a degree of robustness for each node, which can assess how robustly that node is assigned to its community. To test the efficacy of these methods, we deploy them on a variety of well known benchmarks, a hierarchal structured artificial benchmark with a known community and robustness structure, as well as real‐world networks of coauthorships between the faculty at a major university and the network of citations of articles published in Physical Review. In all cases, microcommunities, hierarchy of the communities, and variable node robustness are all observed, providing insights into the structure of the network.Engineering and Applied SciencesPhysic