Analysis of selection pressure exerted on Plasmopara viticola by organically based fungicides

Downy mildew is one of the most important grape diseases world-wide. The pathogen is a genetically highly diversified organism with a high capacity of adaptation. A monitoring of changes in population structure of P. viticola subjected to new copper replacing products or strategies, studied and developed within REPCO (Replacement of Copper Fungicides in Organic Production of Grapevine and Apple in Europe) is important for assessing selection pressure which could lead to a reduction of efficacy of these new measures. Therefore P. viticola lesions collected on untreated and treated vines were analyzed by means of microsatellite markers. No significant differences in the populations structure were determined among untreated and treated populations, indicating that the applied products didn’t exerted any selection pressure on the P. viticola populations

The Teggiolo zone: a key to the Helvetic-Penninic connection (stratigraphy and tectonics in the Val Bavona, Ticino, Central Alps)

The Teggiolo zone is the sedimentary cover of the Antigorio nappe, one of the lowest tectonic units of the Penninic Central Alps. Detailed mapping, stratigraphic and structural analyses, and comparisons with less metamorphic series in several well-studied domains of the Alps, provide a new stratigraphic interpretation. The Teggiolo zone is comprised of several sedimentary cycles, separated by erosive surfaces and large stratigraphic gaps, which cover the time span from Triassic to Eocene. At Mid-Jurassic times it appears as an uplifted, partially emergent block, marking the southern limit of the main Helvetic basin (the Limiting South-Helvetic Rise LSHR). The main mass of the Teggiolo calcschists, whose base truncates the Triassic-Jurassic cycles and can erode the Antigorio basement, consists of fine-grained clastic sediments analogous to the deep-water flyschoid deposits of Late Cretaceous to Eocene age in the North-Penninic (or Valais s.l.) basins. Thus the Antigorio-Teggiolo domain occupies a crucial paleogeographic position, on the boundary between the Helvetic and Penninic realms: from Triassic to Early Cretaceous its affinity is with the Helvetic; at the end of Cretaceous it is incorporated into the North-Penninic basins. An unexpected result is the discovery of the important role played by complex formations of wildflysch type at the top of the Teggiolo zone. They contain blocks of various sizes. According to their nature, three different associations are distinguished that have specific vertical and lateral distributions. These blocks give clues to the existence of territories that have disappeared from the present-day level of observation and impose constraints on the kinematics of early folding and embryonic nappe emplacement. Tectonics produced several phases of superimposed folds and schistosities, more in the metasediments than in the gneissic basement. Older deformations that predate the amplification of the frontal hinge of the nappe generated the dominant schistosity and the km-wide Vanzèla isoclinal fol

Microsatellite based population structure of Plasmopara viticola at single vine scale

The genetic structure of a Plasmopara viticola population was characterized on five single vines, one for each cultivar Regent, Merlot, Isabella, Müller-Thurgau and Solaris, using four neutral specific polymorphic microsatellite markers. Five-hundred and seventy samples were collected at four dates in the period between the 10th of July and the 23rd of August 2006. On average over all five cultivars, 67% of the genotypes present on the single selected vines derived from primary infections and caused 37% of the lesions genotyped. Fifty-three percent of these genotypes occurred only once on the vine throughout the survey period, while 14% were able to asexually reproduce on the selected single vine throughout the survey period, causing 23% of the lesions. Thirty-three percent of the genotypes on the single vine derived from other vines, 28% from vines of other cultivars in the other rows, and 5% from vines of the same cultivar in the same row. New primary infections appear all along the sampling dates. The overwhelmingly quantitative role of primary infections at vineyard scale was known, however here we observed the phenomenon also at the single vine scale and the reduced contribution of secondary lesions to the populations present on more resistant cultivars compared to the susceptible cultivars. As the sampling extended almost to defoliation, the results are judged to be representative of a typical P. viticola epidemi

Selection for fungicide resistance throughout a growing season in populations of Plasmopara viticola

A method for evaluating the potential threat of selection for resistance to organically-based fungicides in populations of P. viticola is needed to screen a large panel of products alternative to copper in organic viticulture. Populations from an unexposed plot were compared throughout one season with a population sprayed with azoxystrobin (Quadris), reported as engendering selection pressure and resistance, and a population sprayed with an organically-based fungicide (Mycosan). The evolution of the three populations was followed with neutral specific SSR markers and with the specific marker for strobilurin resistance, as control of selection for resistant mutants. A reduction in genetic diversity of the P. viticola population was observed in the population sprayed with azoxystrobin, consistent with directional selection toward higher resistance, confirmed by an enhanced frequency of resistant mutants with respect to the unexposed population. In contrast, a higher diversity and a reduced frequency of resistant mutants were observed in the population sprayed with the organically-based fungicide. Assessing a reduction of genotypic diversity allows the detection of selection for resistance and constitutes a valid instrument for screening a large panel of products with non-specific, different and possibly indirect modes of actio

Does the waggle dance help honey bees to forage at greater distances than expected for their body size?

A honey bee colony has been likened to an oil company. Some members of the company or colony prospect for valuable liquid resources. When these are discovered other group members can be recruited to exploit the resource. The recruitment of nestmates to a specific location where there is a patch of flowers should change the economics of scouting, that is, the search for new resource patches. In particular, communication is predicted to make scouting at longer distances worthwhile because a profitable resource patch, once discovered, will enhance the foraging not only of the discoverer but also of nestmates that can be directed to the patch. By virtue of having large colonies and dance communication, honey bees are predicted to be able to profitably scout, and hence forage, at greater distances from the nest than either solitary bees or social bees without communication. We test this hypothesis by first examining existing data on foraging distance to evaluate whether honey bees do indeed forage at greater distances than other bees given their body size. Second, we present a simple cost-benefit analysis of scouting which indicates that communication causes longer range scouting to be more profitable. Overall, our analyses are supportive, but not conclusive, that honey bees forage further than would be expected given their size and that the waggle dance is a cause of the honey bee's exceptional foraging range

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

The 1000 Plant transcriptomes initiative (1KP) explored genetic diversity by sequencing RNA from 1,342 samples representing 1,173 species of green plants (Viridiplantae).This data release accompanies the initiative's final/capstone publication on a set of 3 analyses inferring species trees, whole genome duplications, and gene family expansions. These and previous analyses are based on de novo transcriptome assemblies and related gene predictions. Here, we assess their data and assembly qualities and explain how we detected potential contaminations.These data will be useful to plant and/or evolutionary scientists with interests in particular gene families, either across the green plant tree of life or in more focused lineages

The Value of Information for Populations in Varying Environments

The notion of information pervades informal descriptions of biological systems, but formal treatments face the problem of defining a quantitative measure of information rooted in a concept of fitness, which is itself an elusive notion. Here, we present a model of population dynamics where this problem is amenable to a mathematical analysis. In the limit where any information about future environmental variations is common to the members of the population, our model is equivalent to known models of financial investment. In this case, the population can be interpreted as a portfolio of financial assets and previous analyses have shown that a key quantity of Shannon's communication theory, the mutual information, sets a fundamental limit on the value of information. We show that this bound can be violated when accounting for features that are irrelevant in finance but inherent to biological systems, such as the stochasticity present at the individual level. This leads us to generalize the measures of uncertainty and information usually encountered in information theory

Microsatellite markers spanning the apple ( Malus x domestica Borkh.) genome

A new set of 148 apple microsatellite markers has been developed and mapped on the apple reference linkage map Fiesta x Discovery. One-hundred and seventeen markers were developed from genomic libraries enriched with the repeats GA, GT, AAG, AAC and ATC; 31 were developed from EST sequences. Markers derived from sequences containing dinucleotide repeats were generally more polymorphic than sequences containing trinucleotide repeats. Additional eight SSRs from published apple, pear, and Sorbus torminalis SSRs, whose position on the apple genome was unknown, have also been mapped. The transferability of SSRs across Maloideae species resulted in being efficient with 41% of the markers successfully transferred. For all 156 SSRs, the primer sequences, repeat type, map position, and quality of the amplification products are reported. Also presented are allele sizes, ranges, and number of SSRs found in a set of nine cultivars. All this information and those of the previous CH-SSR series can be searched at the apple SSR database ( http://www.hidras.unimi.it ) to which updates and comments can be added. A large number of apple ESTs containing SSR repeats are available and should be used for the development of new apple SSRs. The apple SSR database is also meant to become an international platform for coordinating this effort. The increased coverage of the apple genome with SSRs allowed the selection of a set of 86 reliable, highly polymorphic, and overall the apple genome well-scattered SSRs. These SSRs cover about 85% of the genome with an average distance of one marker per 15c

Aux origines des rankings. Le système scolaire français face à la comparaison internationale (1870-1900)

Partant de l’analyse d’un tableau élaboré par le statisticien français Émile Levasseur en 1873, qui dresse une hiérarchie des pays du monde en fonction de leurs performances éducatives, cet article se penche sur la genèse, le développement et les usages sociaux de la statistique scolaire internationale. Il montre, d’une part, comment la statistique contribue à créer l’idée d’un « retard scolaire » de la France par rapport aux autres pays occidentaux, accélérant ainsi l’agenda des réformes nationales. D’autre part, il retrace les débuts d’une collaboration scientifique internationale qui, dans les dernières décennies du xixe siècle, œuvre non seulement à la centralisation des données statistiques nationales mais également à l’uniformisation des mesures. En restituant les usages des chiffres comme « outils de preuve » dans le contexte de construction des systèmes scolaires modernes, l’article permet finalement d’aller aux sources de l’obsession contemporaine pour les classements et les rankings éducatifs.This article examines the origins, development and social uses of international statistics in the field of education. It is based on the analysis of a table elaborated by French statistician Émile Levasseur in 1873, which provides a world ranking of countries according to their educational performance. On the one hand, the article shows how statistics helped to create the idea of France’s “educational backwardness”, and thus accelerated the agenda of national reforms. On the other hand, it highlights the rise of an international scientific collaboration in the latter decades of the nineteenth century which aimed to centralise national statistics and standardise measures. By focusing on the various uses of numbers as “tools of proof” within the context of the construction of modern school systems, this article sheds light on the roots of the contemporary obsession for educational rankings