On requirements for federated data integration as a compilation process

Data integration problems are commonly viewed as interoperability issues, where the burden of reaching a common ground for exchanging data is distributed across the peers involved in the process. While apparently an effective approach towards standardization and interoperability, it poses a constraint to data providers who, for a variety of reasons, require backwards compatibility with proprietary or non-standard mechanisms. Publishing a holistic data API is one such use case, where a single peer performs most of the integration work in a many-to-one scenario. Incidentally, this is also the base setting of software compilers, whose operational model is comprised of phases that perform analysis, linkage and assembly of source code and generation of intermediate code. There are several analogies with a data integration process, more so with data that live in the Semantic Web, but what requirements would a data provider need to satisfy, for an integrator to be able to query and transform its data effectively, with no further enforcements on the provider? With this paper, we inquire into what practices and essential prerequisites could turn this intuition into a concrete and exploitable vision, within Linked Data and beyond

SPARQL Query Recommendations by Example

In this demo paper, a SPARQL Query Recommendation Tool (called SQUIRE) based on query reformulation is presented. Based on three steps, Generalization, Specialization and Evaluation, SQUIRE implements the logic of reformulating a SPARQL query that is satisfiable w.r.t a source RDF dataset, into others that are satisfiable w.r.t a target RDF dataset. In contrast with existing approaches, SQUIRE aims at rec- ommending queries whose reformulations: i) reflect as much as possible the same intended meaning, structure, type of results and result size as the original query and ii) do not require to have a mapping between the two datasets. Based on a set of criteria to measure the similarity between the initial query and the recommended ones, SQUIRE demonstrates the feasibility of the underlying query reformulation process, ranks appropriately the recommended queries, and offers a valuable support for query recommendations over an unknown and unmapped target RDF dataset, not only assisting the user in learning the data model and content of an RDF dataset, but also supporting its use without requiring the user to have intrinsic knowledge of the data

Failure to achieve lupus low disease activity state (LLDAS) six months after diagnosis is associated with early damage accrual in Caucasian patients with systemic lupus erythematosus

Background: The aim was to assess the attainability and outcome of the lupus low disease activity state (LLDAS) in the early stages of systemic lupus erythematosus (SLE). Methods: LLDAS prevalence was evaluated at 6 (T1) and 18 (T2) months after diagnosis and treatment initiation (T0) in a monocentric cohort of 107 (median disease duration 9.7 months) prospectively followed Caucasian patients with SLE. Reasons for failure to achieve LLDAS were also investigated. Multivariate models were built to identify factors associated with lack of LLDAS achievement and to investigate the relationship between LLDAS and Systemic Lupus International Collaboration Clinics (SLICC)/Damage Index (SDI) accrual. Results: There were 47 (43.9%) patients in LLDAS at T1 and 48 (44.9%) at T2. The most frequent unmet LLDAS criterion was prednisolone dose >7.5 mg/day (83% of patients with no LLDAS at T1). Disease manifestations with the lowest remission rate during follow up were increased anti-double-stranded DNA (persistently present in 85.7% and 67.5% of cases at T1 and T2, respectively), low serum complement fractions (73.2% and 66.3%) and renal abnormalities (46.4% and 28.6%). Renal involvement at T0 was significantly associated with failure to achieve LLDAS both at T1 (OR 7.8, 95% CI 1.4-43.4; p = 0.019) and T2 (OR 3.9, 95% CI 1.4-10.6; p = 0.008). Presence of any organ damage (SDI â ¥1) at T2 was significantly associated with lack of LLDAS at T1 (OR 5.0, 95% CI 1.5-16.6; p = 0.009) and older age at diagnosis (OR 1.05 per year, 95% CI 1.01-1.09; p = 0.020). Conclusion: LLDAS is a promising treatment target in the early stages of SLE, being attainable and negatively associated with damage accrual, but it fit poorly to patients with renal involvement

SPARQL Query Recommendation by Example: Assessing the Impact of Structural Analysis on Star-Shaped Queries

One of the existing query recommendation strategies for unknown datasets is "by example", i.e. based on a query that the user already knows how to formulate on another dataset within a similar domain. In this paper we measure what contribution a structural analysis of the query and the datasets can bring to a recommendation strategy, to go alongside approaches that provide a semantic analysis. Here we concentrate on the case of star-shaped SPARQL queries over RDF datasets. The illustrated strategy performs a least general generalization on the given query, computes the specializations of it that are satisfiable by the target dataset, and organizes them into a graph. It then visits the graph to recommend first the reformulated queries that reflect the original query as closely as possible. This approach does not rely upon a semantic mapping between the two datasets. An implementation as part of the SQUIRE query recommendation library is discussed

Les paysages, les milieux écologiques et l'environnement vécu comme outils dialogiques d'analyse et de prospective territoriale pour l'implantation d'équipements structurants

International audienceL'aménagement des grandes infrastructures a des effets sur les paysages des sites traversés, ainsi que sur les milieux naturels d'accueil, donc aussi sur des territoires perçus et vécus par les populations habitantes. Or, malgré une incontestable évolution de la prise en compte des problématiques écologiques et environnementales dans le cadre de grands projets, ces effets peuvent conduire à des réactions voire mobilisations locales. Celles-ci affectent, depuis maintenant 30 ans, nombre des grands équipements structurants les territoires

Studying the Pc(4450) resonance in J/psi photoproduction off protons

The LHCb has reported the observation of a resonancelike structure, the Pc(4450), in the J/psi p invariant masses. In our work, we discuss the feasibility of detecting this structure in J/psi photoproduction, e.g. in the measurements that have been approved for the experiments in Hall A/C and in Hall B with CLAS12 at JLab. Also the GlueX Collaboration has already reported preliminary results. We take into account the experimental resolution effects, and perform a global fit to world J/psi photoproduction data in order to study the possibility of observing the Pc(4450) signal in future JLab data. We present a first estimate of the upper limit for the branching ratio of the Pc(4450) into the J/psi p channel, and we study the angular distributions of the differential cross sections. This will shed light on the nature and couplings of the Pc(4450) structure in the future photoproduction experiments.Comment: NSTAR 2017 conference proceeding

Crowdsourcing Linked Data on listening experiences through reuse and enhancement of library data

Research has approached the practice of musical reception in a multitude of ways, such as the analysis of professional critique, sales figures and psychological processes activated by the act of listening. Studies in the Humanities, on the other hand, have been hindered by the lack of structured evidence of actual experiences of listening as reported by the listeners themselves, a concern that was voiced since the early Web era. It was however assumed that such evidence existed, albeit in pure textual form, but could not be leveraged until it was digitised and aggregated. The Listening Experience Database (LED) responds to this research need by providing a centralised hub for evidence of listening in the literature. Not only does LED support search and reuse across nearly 10,000 records, but it also provides machine-readable structured data of the knowledge around the contexts of listening. To take advantage of the mass of formal knowledge that already exists on the Web concerning these contexts, the entire framework adopts Linked Data principles and technologies. This also allows LED to directly reuse open data from the British Library for the source documentation that is already published. Reused data are re-published as open data with enhancements obtained by expanding over the model of the original data, such as the partitioning of published books and collections into individual stand-alone documents. The database was populated through crowdsourcing and seamlessly incorporates data reuse from the very early data entry phases. As the sources of the evidence often contain vague, fragmentary of uncertain information, facilities were put in place to generate structured data out of such fuzziness. Alongside elaborating on these functionalities, this article provides insights into the most recent features of the latest instalment of the dataset and portal, such as the interlinking with the MusicBrainz database, the relaxation of geographical input constraints through text mining, and the plotting of key locations in an interactive geographical browser

Predictors of musculoskeletal flares and Jaccoud׳s arthropathy in patients with systemic lupus erythematosus: A 5-year prospective study

Objective To investigate the prognostic value of US in predicting musculoskeletal flares and Jaccoud׳s arthropathy (JA) in systemic lupus erythematosus (SLE). Methods A total of 80 out of 94 patients (76 female; age 45.5 ± 13.2 years) with non-deforming non-erosive (NDNE) arthritis and 48/60 healthy controls (42 female; age 49.6 ± 11.6 years) completed the 5-year follow-up study. Each patient was prospectively assessed for the occurrence of musculoskeletal flares using BILAG2004 and hand deformities according to Jaccoud׳s articular index. Baseline clinical, serological, semi-quantitative (0–3 scale) ultrasound (US) findings, PD-synovitis and PD-tenosynovitis scores were used as covariates to identify predictors of study outcomes. Short Form 36 v2 (SF36v2) health survey questionnaire was administered. Results Overall, 12 MS flares in 10 (12.5%) patients were recorded and the incidence rate was 3.0 per 100 patient-year. Baseline PD-synovitis score independently predicted MS flare (p < 0.001; RR = 2.0; 95% CI: 1.4–3.0) within 2 years since US examination. In all, 5 (6.2%) patients developed JA whose incidence rate was 1.25 per 100 patient-year. Independent risk factors for development of JA were higher longitudinal BILAG score in the musculoskeletal domain (p = 0.005; RR = 2.4; 95% CI: 1.3–4.6) and longer disease duration (p = 0.013; RR 1.2; 95% CI: 1.1–1.3). JA and active musculoskeletal inflammation (BILAG ≥ C), but not US erosions, were associated with lower results in SF36v2 physical and mental summary components. Conclusions Performing musculoskeletal US can be useful in order to predict MS flares. Jaccoud׳s deformities may arise in patients with long-standing SLE and prolonged, even subclinical, joint and tendon inflammation

Prognostic impact of coronary microcirculation abnormalities in systemic sclerosis: a prospective study to evaluate the role of non-invasive tests

INTRODUCTION: Microcirculation dysfunction is a typical feature of systemic sclerosis (SSc) and represents the earliest abnormality of primary myocardial involvement. We assessed coronary microcirculation status by combining two functional tests in SSc patients and estimating its impact on disease outcome. METHODS: Forty-one SSc patients, asymptomatic for coronary artery disease, were tested for coronary flow velocity reserve (CFR) by transthoracic-echo-Doppler with adenosine infusion (A-TTE) and for left ventricular wall motion abnormalities (WMA) by dobutamine stress echocardiography (DSE). Myocardial multi-detector computed tomography (MDCT) enabled the presence of epicardial stenosis, which could interfere with the accuracy of the tests, to be excluded. Patient survival rate was assessed over a 6.7- ± 3.5-year follow-up. RESULTS: Nineteen out of 41 (46%) SSc patients had a reduced CFR (≤2.5) and in 16/41 (39%) a WMA was observed during DSE. Furthermore, 13/41 (32%) patients showed pathological CFR and WMA. An inverse correlation between wall motion score index (WMSI) during DSE and CFR value (r = -0.57, P <0.0001) was observed; in addition, CFR was significantly reduced (2.21 ± 0.38) in patients with WMA as compared to those without (2.94 ± 0.60) (P <0.0001). In 12 patients with abnormal DSE, MDCT was used to exclude macrovasculopathy. During a 6.7- ± 3.5-year follow-up seven patients with abnormal coronary functional tests died of disease-related causes, compared to only one patient with normal tests. CONCLUSIONS: A-TTE and DSE tests are useful tools to detect non-invasively pre-clinical microcirculation abnormalities in SSc patients; moreover, abnormal CFR and WMA might be related to a worse disease outcome suggesting a prognostic value of these tests, similar to other myocardial diseases

Ultrasonographic assessment of bone erosions in the different subtypes of systemic lupus erythematosus arthritis: Comparison with computed tomography

Background: The aim was to determine the accuracy of high-resolution ultrasonography (US) for detecting erosion in the metacarpophalangeal (MCP) and wrist joints of patients with different subtypes of systemic lupus erythematosus (SLE) arthritis, using computed tomography (CT) as the gold-standard reference method. Method: The ulnar head, radiocarpal and second to fifth MCP joints in 26 patients with SLE - 9 classified as having rhupus syndrome, 10 as having Jaccoud's arthropathy (JA) and 7 as having non-deforming non-erosive (NDNE) arthritis - were subdivided into areas and bilaterally evaluated for the presence of bone erosion by CT and US. On CT, erosion volume was scored according to the outcome measures in rheumatology-rheumatoid arthritis magnetic resonance imaging (OMERACT-RAMRIS) score. On US, erosions were semi-quantitatively scored 0-3 according to scoring by ultrasound structural erosion (ScUSSe) systems. Results: Erosions were detected by CT in 92/728 areas (12.6 %) and by US in 43/728 areas (5.9 %). Sensitivity, specificity and accuracy of US overall was 36 %, 98 % and 90 % compared with 57 %, 98 % and 93 % in the dorsal and lateral aspects of the second and fifth MCP, which were identified as areas with the best US reliability. Adding wrist joints would capture a larger number of erosions without affecting the accuracy. US detected 90.0 % of CT erosions with bone volume loss >20 % and 51.2 % of erosions with bone volume loss >10 %. Patients with rhupus had a greater number of larger erosions than those with JA or NDNE arthritis, with prevalent involvement of the MCP joints. Overall reliability of US in detecting bone erosions was moderate for rhupus syndrome (0.55) and JA (0.58), but poor for NDNE arthritis (0.10). Conclusion: US had moderate sensitivity and excellent specificity for detection and semi-quantitative assessment of bone erosions in SLE