Ge(Li) data reduction using small computers

The advantages and limitations of using a small computer to analyze Ge(Li) radiation spectra are studied. The computer has to: (1) find the spectrum peaks, (2) determine the count rate in the photopeaks, and (3) relate the count rate to known gamma transitions to find the amount of each radionuclide present. Results show that tasks one and two may be done by the computer but task three must be done by an experimenter or a larger computer

Low-density genotype panel for both parentage verification and discovery in a multi-breed sheep population

peer-reviewedThe generally low usage of artificial insemination and single-sire mating in sheep, compounded by mob lambing (and lambing outdoors), implies that parentage assignment in sheep is challenging. The objective here was to develop a low-density panel of single nucleotide polymorphisms (SNPs) for accurate parentage verification and discovery in sheep. Of particular interest was where SNP selection was limited to only a subset of chromosomes, thereby eliminating the ability to accurately impute genome-wide denser marker panels. Data used consisted of 10,933 candidate SNPs on 9,390 purebred sheep. These data consisted of 1,876 validated genotyped sire–offspring pairs and 2,784 validated genotyped dam–offspring pairs. The SNP panels developed consisted of 87 SNPs to 500 SNPs. Parentage verification and discovery were undertaken using 1) exclusion, based on the sharing of at least one allele between candidate parent–offspring pairs, and 2) a likelihood-based approach. Based on exclusion, allowing for one discordant offspring–parent genotype, a minimum of 350 SNPs was required when the goal was to unambiguously identify the true sire or dam from all possible candidates. Results suggest that, if selecting SNPs across the entire genome, a minimum of 250 carefully selected SNPs are required to ensure that the most likely selected parent (based on the likelihood approach) was, in fact, the true parent. If restricting the SNPs to just a subset of chromosomes, the recommendation is to use at least a 300-SNP panel from at least six chromosomes, with approximately an equal number of SNPs per chromosome

Oxygen isotopic and petrological constraints on the origin and relationship of IIE iron meteorites and H chondrites

New oxygen isotopic measurements of IIEs and H chondrites are indistinguishable — strengthening a possible common origin for these groups. Combining oxygen results with mineralogy, the nature of their parent body or bodies can be explored

Turning off the Lights: How Dark is Dark Matter?

We consider current observational constraints on the electromagnetic charge of dark matter. The velocity dependence of the scattering cross-section through the photon gives rise to qualitatively different constraints than standard dark matter scattering through massive force carriers. In particular, recombination epoch observations of dark matter density perturbations require that $\epsilon$, the ratio of the dark matter to electronic charge, is less than $10^{-6}$ for $m_X = 1 GeV$, rising to $\epsilon < 10^{-4}$ for $m_X = 10 TeV$. Though naively one would expect that dark matter carrying a charge well below this constraint could still give rise to large scattering in current direct detection experiments, we show that charged dark matter particles that could be detected with upcoming experiments are expected to be evacuated from the Galactic disk by the Galactic magnetic fields and supernova shock waves, and hence will not give rise to a signal. Thus dark matter with a small charge is likely not a source of a signal in current or upcoming dark matter direct detection experiments.Comment: 19 pages, 2 figures; v2 - figures fixed, references adde

Poison ivy

Cover title.Includes bibliographical references

Global gyrokinetic simulations of intrinsic rotation in ASDEX Upgrade Ohmic L-mode plasmas

Non-linear, radially global, turbulence simulations of ASDEX Upgrade (AUG) plasmas are performed and the nonlinear generated intrinsic flow shows agreement with the intrinsic flow gradients measured in the core of Ohmic L-mode plasmas at nominal parameters. Simulations utilising the kinetic electron model show hollow intrinsic flow profiles as seen in a predominant number of experiments performed at similar plasma parameters. In addition, significantly larger flow gradients are seen than in a previous flux-tube analysis (Hornsby et al {\it Nucl. Fusion} (2017)). Adiabatic electron model simulations can show a flow profile with opposing sign in the gradient with respect to a kinetic electron simulation, implying a reversal in the sign of the residual stress due to kinetic electrons. The shaping of the intrinsic flow is strongly determined by the density gradient profile. The sensitivity of the residual stress to variations in density profile curvature is calculated and seen to be significantly stronger than to neoclassical flows (Hornsby et al {\it Nucl. Fusion} (2017)). This variation is strong enough on its own to explain the large variations in the intrinsic flow gradients seen in some AUG experiments. Analysis of the symmetry breaking properties of the turbulence shows that profile shearing is the dominant mechanism in producing a finite parallel wave-number, with turbulence gradient effects contributing a smaller portion of the parallel wave-vector

Neutrino Phenomenology in a 3+1+1 Framework

Evidence continues to grow in the MiniBooNE (MB) antineutrino mode supporting a low-energy excess compatible with the MB neutrino mode and possibly also confirming the results of the LSND experiment. At least one sterile neutrino is required to explain the anomalies consistent with the observations of other experiments. At the same time, there is a strong tension between the positive signals of LSND and MB and the null results of nu_e and nu_mu disappearance experiments. We explore a scenario, first proposed in \cite{Nelson:2010hz}, where the presence of an additional heavy sterile neutrino (with mass well above an eV) can alleviate tension between LSND, MB and the null results of disappearance experiments. We compare and contrast this 3+1+1 scenario with the more standard 3+1 scenario and carry out global fits to all oscillation data including new 2011 MB anti-nu data. We find that the tension can be somewhat alleviated and that a phenomenologically viable window for the heavy neutrino, consistent with rare decays and BBN constraints, can be found if the fifth neutrino has a mass of order 0.3 - 10 GeV. We also find, however, that the 2011 MB anti-nu data exacerbates the tension with null experiments in both the 3+1 and 3+1+1 models when the lowest energy bins are included, resulting in little improvement in the global fit. We also discuss the implications of an additional neutrino for the reactor and gallium anomalies, and show that an oscillation explanation of the anomalies is disfavored by cosmological considerations, direct searches, and precision electroweak tests.Comment: 22 pages, 5 figures; replaced to reflect journal versio

Laboratory evaluation of stable isotope labeling of Culicoides (Diptera: Ceratopogonidae) for adult dispersal studies.

BackgroundStable isotope labeling is a promising method for use in insect mark-capture and dispersal studies. Culicoides biting midges, which transmit several important animal pathogens, including bluetongue virus (BTV) and epizootic hemorrhagic disease virus (EHDV), are small flies that develop in various semi-aquatic habitats. Previous Culicoides dispersal studies have suffered from the limitations of other labeling techniques, and an inability to definitively connect collected adult midges to specific immature development sites.ResultsAdult C. sonorensis were successfully labeled with 13C and 15N stable isotopes as larvae developing in a semi-aquatic mud substrate in the laboratory. High and low-dose isotope treatments for both elements significantly enriched midges above the background isotope levels of unenriched controls. Enrichment had no effect on C. sonorensis survival, though a slight (~ 5 day) delay in emergence was observed, and there was no significant effect of pool size on 13C or 15N enrichment levels.ConclusionsStable isotope labeling is life-long, and does not interfere with natural insect behaviors. Stable isotope enrichment using 13C or 15N shows promise for Culicoides dispersal studies in the field. This method can be used to identify adult dispersal from larval source habitat where a midge developed. It may be possible to detect a single enriched midge in a pool of unenriched individuals, though further testing is needed to confirm the sensitivity of this method