Right Atrial Metastatic Melanoma with Unknown Primaries

A 54-year-old male with history of anemia and rheumatoid arthritis presented with a three-month history of dyspnea on exertion and lower extremity edema. Patient was referred for a transthoracic echocardiogram that revealed a large right atrial mass with reduced ejection fraction of 40% and an incidental large liver mass. Subsequent cardiac MRI revealed a lobulated right atrial mass measuring 5.4 cm * 5.3 cm with inferior vena cava compression and adjacent multiple large liver lesions confirmed to be malignant melanoma through biopsy. Interestingly, no primaries were found in the patient. PET/CT imaging displayed hypermetabolic masses within the right atrium and liver that likely represent metastases, as well as bilateral pleural effusions, most likely due to heart failure. Preoperative coronary angiogram demonstrated perfusion to the mass by a dense network of neovasculature arising from the mid right coronary artery. The cardiac melanoma was surgically removed, and the right atrium was reconstructed with a pericardial patch. After surgery, all cardiac chambers appeared normal in size and function with associated moderate tricuspid regurgitation. The patient is currently being administered ipilimumab for systemic therapy of metastatic melanoma

Teaching the Doppler Effect in Astrophysics

The Doppler effect is a shift in the frequency of waves emitted from an object moving relative to the observer. By observing and analysing the Doppler shift in electromagnetic waves from astronomical objects, astronomers gain greater insight into the structure and operation of our universe. In this paper, a simple technique is described for teaching the basics of the Doppler effect to undergraduate astrophysics students using acoustic waves. An advantage of the technique is that it produces a visual representation of the acoustic Doppler shift. The equipment comprises a 40 kHz acoustic transmitter and a microphone. The sound is bounced off a computer fan and the signal collected by a DrDAQ ADC and processed by a spectrum analyser. Widening of the spectrum is observed as the fan power supply potential is increased from 4 to 12 V.Comment: 9 pages, 5 figures, published in Eur. J. Phy

Thallium 201 Myocardial Imaging

In recent years technological advancements in nuclear medicine have resulted in increasing interest in the use of radioisotope techniques in the evaluation of cardiac disease, and cardiovascular nuclear medicine has developed into a useful noninvasive tool in clinical cardiology. Myocardial infarct imaging with technetium-99m pyrophosphate has been demonstrated to be a reliable method in the diagnosis of suspected myocardial infarction. Radioisotope cardiac flow studies are useful in the diagnosis and follow-up of congenital heart disease, and gated cardiac blood pool imaging is emerging as an important technique in the evaluation of left ventricular function and ejection fraction. One of the more promising recent applications of nuclear medicine in cardiology has been the development of myocardial perfusion imaging in the evaluation of coronary artery disease. Thallium 201 is the major radioisotope employed in myocardial perfusion imaging and this report will review its basic properties and its use in the diagnosis of ischemic heart disease

A comment on the relation between diffraction and entropy

Diffraction methods are used to detect atomic order in solids. While uniquely ergodic systems with pure point diffraction have zero entropy, the relation between diffraction and entropy is not as straightforward in general. In particular, there exist families of homometric systems, which are systems sharing the same diffraction, with varying entropy. We summarise the present state of understanding by several characteristic examples.Comment: 7 page

Using electric network theory to model the spread of oak processionary moth, Thaumetopoea processionea, in urban woodland patches

Context: Habitat fragmentation is increasing as a result of anthropogenic activities, especially in urban areas. Dispersal through fragmented habitats is key for species to spread, persist in metapopulations and shift range in response to climate change. However, high habitat connectivity may also hasten the spread of invasive species. Objective: To develop a model of spread in fragmented landscapes and apply it to the spread of an invasive insect in urban woodland. Methods: We applied a patch-based model, based on electric network theory, to model the current and predicted future spread of oak processionary moth (OPM: Thaumetopoea processionea) from its source in west London. We compared the pattern of ‘effective distance’ from the source (i.e. the patch ‘voltage’ in the model) with the observed spread of the moth from 2006 to 2012. Results: We showed that ‘effective distance’ fitted current spread of OPM. Patches varied considerably in their ‘current’ and ‘power’ (metrics from the model), which is an indication of their importance in the future spread of OPM. Conclusions: Patches identified as ‘important’ are potential ‘pinch points’ and regions of high ‘flow’, where resources for detection and management will be most cost-effectively deployed. However, data on OPM dispersal and the distribution of oak trees limited the strength of our conclusions, so should be priorities for further data collection. This application of electric network theory can be used to inform landscape-scale conservation initiatives both to reduce the spread of invasives and to facilitate large-scale species’ range shifts in response to climate change

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bhatnagar, S., Cowley, E. S., Kopf, S. H., Pérez Castro, S., Kearney, S., Dawson, S. C., Hanselmann, K., & Ruff, S. E. Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom. Environmental Microbiome, 15(1),(2020): 3, doi:10.1186/s40793-019-0348-0.Background: Lagoons are common along coastlines worldwide and are important for biogeochemical element cycling, coastal biodiversity, coastal erosion protection and blue carbon sequestration. These ecosystems are frequently disturbed by weather, tides, and human activities. Here, we investigated a shallow lagoon in New England. The brackish ecosystem releases hydrogen sulfide particularly upon physical disturbance, causing blooms of anoxygenic sulfur-oxidizing phototrophs. To study the habitat, microbial community structure, assembly and function we carried out in situ experiments investigating the bloom dynamics over time. Results: Phototrophic microbial mats and permanently or seasonally stratified water columns commonly contain multiple phototrophic lineages that coexist based on their light, oxygen and nutrient preferences. We describe similar coexistence patterns and ecological niches in estuarine planktonic blooms of phototrophs. The water column showed steep gradients of oxygen, pH, sulfate, sulfide, and salinity. The upper part of the bloom was dominated by aerobic phototrophic Cyanobacteria, the middle and lower parts by anoxygenic purple sulfur bacteria (Chromatiales) and green sulfur bacteria (Chlorobiales), respectively. We show stable coexistence of phototrophic lineages from five bacterial phyla and present metagenome-assembled genomes (MAGs) of two uncultured Chlorobaculum and Prosthecochloris species. In addition to genes involved in sulfur oxidation and photopigment biosynthesis the MAGs contained complete operons encoding for terminal oxidases. The metagenomes also contained numerous contigs affiliating with Microviridae viruses, potentially affecting Chlorobi. Our data suggest a short sulfur cycle within the bloom in which elemental sulfur produced by sulfide-oxidizing phototrophs is most likely reduced back to sulfide by Desulfuromonas sp. Conclusions: The release of sulfide creates a habitat selecting for anoxygenic sulfur-oxidizing phototrophs, which in turn create a niche for sulfur reducers. Strong syntrophism between these guilds apparently drives a short sulfur cycle that may explain the rapid development of the bloom. The fast growth and high biomass yield of Chlorobi-affiliated organisms implies that the studied lineages of green sulfur bacteria can thrive in hypoxic habitats. This oxygen tolerance is corroborated by oxidases found in MAGs of uncultured Chlorobi. The findings improve our understanding of the ecology and ecophysiology of anoxygenic phototrophs and their impact on the coupled biogeochemical cycles of sulfur and carbon.This work was carried out at the Microbial Diversity summer course at the Marine Biological Laboratory in Woods Hole, MA. The course was supported by grants from National Aeronautics and Space Administration, the US Department of Energy, the Simons Foundation, the Beckman Foundation, and the Agouron Institute. Additional funding for SER was provided by the Marine Biological Laboratory

ZFIRE: Using Hα\alpha equivalent widths to investigate the in situ initial mass function at z~2

We use the ZFIRE survey (http://zfire.swinburne.edu.au) to investigate the high mass slope of the initial mass function (IMF) for a mass-complete (log10(M$_*$/M$_\odot$)~9.3) sample of 102 star-forming galaxies at z~2 using their H$\alpha$ equivalent widths (H$\alpha$-EW) and rest-frame optical colours. We compare dust-corrected H$\alpha$-EW distributions with predictions of star-formation histories (SFH) from PEGASE.2 and Starburst99 synthetic stellar population models. We find an excess of high H$\alpha$-EW galaxies that are up to 0.3--0.5 dex above the model-predicted Salpeter IMF locus and the H$\alpha$-EW distribution is much broader (10--500 \AA) than can easily be explained by a simple monotonic SFH with a standard Salpeter-slope IMF. Though this discrepancy is somewhat alleviated when it is assumed that there is no relative attenuation difference between stars and nebular lines, the result is robust against observational biases, and no single IMF (i.e. non-Salpeter slope) can reproduce the data. We show using both spectral stacking and Monte Carlo simulations that starbursts cannot explain the EW distribution. We investigate other physical mechanisms including models with variations in stellar rotation, binary star evolution, metallicity, and the IMF upper-mass cutoff. IMF variations and/or highly rotating extreme metal poor stars (Z~0.1Z$_\odot$) with binary interactions are the most plausible explanations for our data. If the IMF varies, then the highest H$\alpha$-EWs would require very shallow slopes ($\Gamma$>-1.0) with no one slope able to reproduce the data. Thus, the IMF would have to vary stochastically. We conclude that the stellar populations at z~2 show distinct differences from local populations and there is no simple physical model to explain the large variation in H$\alpha$-EWs at z~2.Comment: Accepted to MNRAS. 43 pages, 27 Figures. Survey website: http://zfire.swinburne.edu.au

Z-FIRE: ISM properties of the z = 2.095 COSMOS Cluster

We investigate the ISM properties of 13 star-forming galaxies within the z~2 COSMOS cluster. We show that the cluster members have [NII]/Ha and [OIII]/Hb emission-line ratios similar to z~2 field galaxies, yet systematically different emission-line ratios (by ~0.17 dex) from the majority of local star-forming galaxies. We find no statistically significant difference in the [NII]/Ha and [OIII]/Hb line ratios or ISM pressures among the z~2 cluster galaxies and field galaxies at the same redshift. We show that our cluster galaxies have significantly larger ionization parameters (by up to an order of magnitude) than local star-forming galaxies. We hypothesize that these high ionization parameters may be associated with large specific star formation rates (i.e. a large star formation rate per unit stellar mass). If this hypothesis is correct, then this relationship would have important implications for the geometry and/or the mass of stars contained within individual star clusters as a function of redshift.Comment: 11 pages, 5 figures, accepted for publication in Ap

ZFIRE: A KECK/MOSFIRE Spectroscopic Survey of Galaxies in Rich Environments at z~2

We present an overview and the first data release of ZFIRE, a spectroscopic redshift survey of star-forming galaxies that utilizes the MOSFIRE instrument on Keck-I to study galaxy properties in rich environments at $1.5<z<2.5$. ZFIRE measures accurate spectroscopic redshifts and basic galaxy properties derived from multiple emission lines. The galaxies are selected from a stellar mass limited sample based on deep near infra-red imaging ($\mathrm{K_{AB}<25}$) and precise photometric redshifts from the ZFOURGE and UKIDSS surveys as well as grism redshifts from 3DHST. Between 2013--2015 ZFIRE has observed the COSMOS and UDS legacy fields over 13 nights and has obtained 211 galaxy redshifts over $1.57<z<2.66$ from a combination of nebular emission lines (such as \Halpha, \NII, \Hbeta, \OII, \OIII, \SII) observed at 1--2\micron. Based on our medium-band NIR photometry, we are able to spectrophotometrically flux calibrate our spectra to \around10\% accuracy. ZFIRE reaches $5\sigma$ emission line flux limits of \around$\mathrm{3\times10^{-18}~erg/s/cm^2}$ with a resolving power of $R=3500$ and reaches masses down to \around10$^{9}$\msol. We confirm that the primary input survey, ZFOURGE, has produced photometric redshifts for star-forming galaxies (including highly attenuated ones) accurate to $\Delta z/(1+z\mathrm{_{spec})}=0.015$ with $0.7\%$ outliers. We measure a slight redshift bias of $<0.001$, and we note that the redshift bias tends to be larger at higher masses. We also examine the role of redshift on the derivation of rest-frame colours and stellar population parameters from SED fitting techniques. The ZFIRE survey extends spectroscopically-confirmed $z\sim 2$ samples across a richer range of environments, here we make available the first public release of the data for use by the community.\footnote{\url{http://zfire.swinburne.edu.au}}Comment: Published in ApJ. Data available at http://zfire.swinburne.edu.au, Code for figures at https://github.com/themiyan/zfire_survey, 31 pages, 24 figure

Swimming with ShARCS: Comparison of On-sky Sensitivity With Model Predictions for ShaneAO on the Lick Observatory 3-meter Telescope

The Lick Observatory's Shane 3-meter telescope has been upgraded with a new infrared instrument (ShARCS - Shane Adaptive optics infraRed Camera and Spectrograph) and dual-deformable mirror adaptive optics (AO) system (ShaneAO). We present first-light measurements of imaging sensitivity in the Ks band. We compare measured results to predicted signal-to-noise ratio and magnitude limits from modeling the emissivity and throughput of ShaneAO and ShARCS. The model was validated by comparing its results to the Keck telescope adaptive optics system model and then by estimating the sky background and limiting magnitudes for IRCAL, the previous infra-red detector on the Shane telescope, and comparing to measured, published results. We predict that the ShaneAO system will measure lower sky backgrounds and achieve 20\% higher throughput across the $JHK$ bands despite having more optical surfaces than the current system. It will enable imaging of fainter objects (by 1-2 magnitudes) and will be faster to reach a fiducial signal-to-noise ratio by a factor of 10-13. We highlight the improvements in performance over the previous AO system and its camera, IRCAL.Comment: 13 pages, 5 figures, SPIE Astronomical Telescopes + Instrumentation, Montreal 201