Quantifying the Effect of Non-Larmor Motion of Electrons on the Pressure Tensor

In space plasma, various effects of magnetic reconnection and turbulence cause the electron motion to significantly deviate from their Larmor orbits. Collectively these orbits affect the electron velocity distribution function and lead to the appearance of the "non-gyrotropic" elements in the pressure tensor. Quantification of this effect has important applications in space and laboratory plasma, one of which is tracing the electron diffusion region (EDR) of magnetic reconnection in space observations. Three different measures of agyrotropy of pressure tensor have previously been proposed, namely, $A\varnothing_e$, $D_{ng}$ and $Q$. The multitude of contradictory measures has caused confusion within the community. We revisit the problem by considering the basic properties an agyrotropy measure should have. We show that $A\varnothing_e$, $D_{ng}$ and $Q$ are all defined based on the sum of the principle minors (i.e. the rotation invariant $I_2$) of the pressure tensor. We discuss in detail the problems of $I_2$-based measures and explain why they may produce ambiguous and biased results. We introduce a new measure $AG$ constructed based on the determinant of the pressure tensor (i.e. the rotation invariant $I_3$) which does not suffer from the problems of $I_2$-based measures. We compare $AG$ with other measures in 2 and 3-dimension particle-in-cell magnetic reconnection simulations, and show that $AG$ can effectively trace the EDR of reconnection in both Harris and force-free current sheets. On the other hand, $A\varnothing_e$ does not show prominent peaks in the EDR and part of the separatrix in the force-free reconnection simulations, demonstrating that $A\varnothing_e$ does not measure all the non-gyrotropic effects in this case, and is not suitable for studying magnetic reconnection in more general situations other than Harris sheet reconnection.Comment: accepted by Phys. of Plasm

Non-radial motion and the NFW profile

The self-similar infall model (SSIM) is normally discussed in the context of radial orbits in spherical symmetry. However it is possible to retain the spherical symmetry while permitting the particles to move in Keplerian ellipses, each having the squared angular momentum peculiar to their 'shell'. The spherical 'shell', defined for example by the particles turning at a given radius, then moves according to the radial equation of motion of a 'shell' particle. The 'shell' itself has no physical existence except as an ensemble of particles, but it is convenient to sometimes refer to the shells since it is they that are followed by a shell code. In this note we find the distribution of squared angular momentum as a function of radius that yields the NFW density profile for the final dark matter halo. It transpires that this distribution is amply motivated dimensionally. An effective 'lambda' spin parameter is roughly constant over the shells. We also study the effects of angular momentum on the relaxation of a dark matter system using a three dimensional representation of the relaxed phase space.Comment: accepted for publication in Astronomy and Astrophysics. date received: 31-03-03 date accepted: 10-06-0

A systematic numerical study of the tidal instability in a rotating triaxial ellipsoid

The full non-linear evolution of the tidal instability is studied numerically in an ellipsoidal fluid domain relevant for planetary cores applications. Our numerical model, based on a finite element method, is first validated by reproducing some known analytical results. This model is then used to address open questions that were up to now inaccessible using theoretical and experimental approaches. Growth rates and mode selection of the instability are systematically studied as a function of the aspect ratio of the ellipsoid and as a function of the inclination of the rotation axis compared to the deformation plane. We also quantify the saturation amplitude of the flow driven by the instability and calculate the viscous dissipation that it causes. This tidal dissipation can be of major importance for some geophysical situations and we thus derive general scaling laws which are applied to typical planetary cores

Tidal instability in a rotating and differentially heated ellipsoidal shell

The stability of a rotating flow in a triaxial ellipsoidal shell with an imposed temperature difference between inner and outer boundaries is studied numerically. We demonstrate that (i) a stable temperature field encourages the tidal instability, (ii) the tidal instability can grow on a convective flow, which confirms its relevance to geo- and astrophysical contexts and (iii) its growth rate decreases when the intensity of convection increases. Simple scaling laws characterizing the evolution of the heat flux based on a competition between viscous and thermal boundary layers are derived analytically and verified numerically. Our results confirm that thermal and tidal effects have to be simultaneously taken into account when studying geophysical and astrophysical flows

Diversity of Fe2+ entry and oxidation in ferritins

The essential metal iron presents two major problems for life: it is potentially highly toxic due to its redox activity, and its extremely low solubility in aqueous solution in the presence of O2 can make it hard to acquire and store safely. Ferritins are part of nature’s answer to these problems, as they store iron in a safe but accessible form in all types of cells. How they achieve this has been the subject of intense research for several decades. Here, we highlight recent progress in elucidating the routes by which Fe2+ ions access the catalytic ferroxidase centers, and the mechanisms by which Fe2+ is oxidized. Emerging from this is a picture of diversity, both in terms of Fe2+ entry pathways and the roles played by the structurally distinct diiron ferroxidase centers

On dissociation of heavy mesons in a hot quark-gluon plasma

We compare two mechanisms for the dissociation of heavy mesons in an infinite quark-gluon plasma: dynamic Debye screening and multiple scattering. Using the uncertainty principle inspired by a Schrodinger-like equation, we find that the criterion a_B\simeq1/\mu\simeq 1/(\alpha_{eff}^{1/2}T) with \alpha_{eff}\equiv\alpha(N_c+{N_f\over2}) is parametrically true both for the dissociation of fast moving heavy mesons with a size a_B due to dynamic Debye screening as well as for mesons at rest in the medium. In contrast, we find that the criterion for the dissociation of heavy mesons due to uncorrelated multiple scattering is parametrically 1/a_B \simeq [\gamma\alpha_{eff}\ln{1/\alpha_{eff}}]^{1/3}T. Therefore, multiple scattering is a more efficient mechanism for the dissociation of heavy mesons in an infinite hot plasma.Comment: 23 pages, 2 figures; minor changes, added references, accepted in Nuclear Physics

Elliptical instability of a flow in a rotating shell

A theoretical and experimental study of the spin-over mode induced by the elliptical instability of a flow contained in a slightly deformed rotating spherical shell is presented. This geometrical configuration mimics the liquid rotating cores of planets when deformed by tides coming from neighboring gravitational bodies. Theoretical estimations for the growth rates and for the non linear amplitude saturations of the unstable mode are obtained and compared to experimental data obtained from Laser D\"{o}ppler anemometry measurements. Visualizations and descriptions of the various characteristics of the instability are given as functions of the flow parameter

Non-Fermi-Liquid Specific Heat of Normal Degenerate Quark Matter

We compute the low-temperature behavior of the specific heat of normal (non-color-superconducting) degenerate quark matter as well as that of an ultradegenerate electron gas. Long-range magnetic interactions lead to non-Fermi-liquid behavior with an anomalous leading $T\ln T^{-1}$ term. Depending on the thermodynamic potential used as starting point, this effect appears as a consequence of the logarithmic singularity in the fermion self-energy at the Fermi surface or directly as a contribution from the only weakly screened quasistatic magnetic gauge bosons. We show that a calculation of Boyanovsky and de Vega claiming the absence of a leading $T\ln T^{-1}$ term missed it by omitting vector boson contributions to the internal energy. Using a formulation which collects all nonanalytic contributions in bosonic ring diagrams, we systematically calculate corrections beyond the well-known leading-log approximation. The higher-order terms of the low-temperature expansion turn out to also involve fractional powers $T^{(3+2n)/3}$ and we explicitly determine their coefficients up to and including order $T^{7/3}$ as well as the subsequent logarithmically enhanced term $T^3 \ln (c/T)$. We derive also a hard-dense-loop resummed expression which contains the infinite series of anomalous terms to leading order in the coupling and which we evaluate numerically. At low temperatures, the resulting deviation of the specific heat from its value in naive perturbation theory is significant in the case of strongly coupled normal quark matter and thus of potential relevance for the cooling rates of (proto-)neutron stars with a quark matter component.Comment: REVTEX, 26 pages, 5 postscript figures. v3: new chapter added which performs a complete hard-dense-loop resummation, covering the infinite series of anomalous terms and extending the range of applicability to all T << m

Tubulin cofactors and Arl2 are cage-like chaperones that regulate the soluble αβ-tubulin pool for microtubule dynamics.

Microtubule dynamics and polarity stem from the polymerization of αβ-tubulin heterodimers. Five conserved tubulin cofactors/chaperones and the Arl2 GTPase regulate α- and β-tubulin assembly into heterodimers and maintain the soluble tubulin pool in the cytoplasm, but their physical mechanisms are unknown. Here, we reconstitute a core tubulin chaperone consisting of tubulin cofactors TBCD, TBCE, and Arl2, and reveal a cage-like structure for regulating αβ-tubulin. Biochemical assays and electron microscopy structures of multiple intermediates show the sequential binding of αβ-tubulin dimer followed by tubulin cofactor TBCC onto this chaperone, forming a ternary complex in which Arl2 GTP hydrolysis is activated to alter αβ-tubulin conformation. A GTP-state locked Arl2 mutant inhibits ternary complex dissociation in vitro and causes severe defects in microtubule dynamics in vivo. Our studies suggest a revised paradigm for tubulin cofactors and Arl2 functions as a catalytic chaperone that regulates soluble αβ-tubulin assembly and maintenance to support microtubule dynamics