The Generation of Successive Unmarked Mutations and Chromosomal Insertion of Heterologous Genes in Actinobacillus pleuropneumoniae Using Natural Transformation

We have developed a simple method of generating scarless, unmarked mutations in Actinobacillus pleuropneumoniae by exploiting the ability of this bacterium to undergo natural transformation, and with no need to introduce plasmids encoding recombinases or resolvases. This method involves two successive rounds of natural transformation using linear DNA: the first introduces a cassette carrying cat (which allows selection by chloramphenicol) and sacB (which allows counter-selection using sucrose) flanked by sequences to either side of the target gene; the second transformation utilises the flanking sequences ligated directly to each other in order to remove the cat-sacB cassette. In order to ensure efficient uptake of the target DNA during transformation, A. pleuropneumoniae uptake sequences are added into the constructs used in both rounds of transformation. This method can be used to generate multiple successive deletions and can also be used to introduce targeted point mutations or insertions of heterologous genes into the A. pleuropneumoniae chromosome for development of live attenuated vaccine strains. So far, we have applied this method to highly transformable isolates of serovars 8 (MIDG2331), which is the most prevalent in the UK, and 15 (HS143). By screening clinical isolates of other serovars, it should be possible to identify other amenable strains

Resonance Patterns in a Stadium-shaped Microcavity

We investigate resonance patterns in a stadium-shaped microcavity around $n_ck R \simeq 10$, where $n_c$ is the refractive index, $k$ the vacuum wavenumber, and $R$ the radius of the circular part of the cavity. We find that the patterns of high $Q$ resonances can be classified, even though the classical dynamics of the stadium system is chaotic. The patterns of the high $Q$ resonances are consistent with the ray dynamical consideration, and appears as the stationary lasing modes with low pumping rate in the nonlinear dynamical model. All resonance patterns are presented in a finite range of $kR$.Comment: 8 pages, 9 figure

Factors governing macrozoobenthic assemblages in perennial springs in north-western Switzerland

Springs are important freshwater habitats that provide refuge for many rare species. In this study, the fauna and abiotic parameters of 20 perennial springs in north-western Switzerland were investigated. Correlation of abiotic and macrozoobenthos data showed that physicochemical parameters had little impact on macrozoobenthic composition, whereas specific substrate parameters strongly influenced the composition of the macrofauna. Surprisingly, nonmetric multidimensional scaling did not reveal a grouping of springs with similar substrate composition or macrozoobenthic assemblages. However, discharge was identified as the factor significantly determining substrate and the composition of macroinvertebrate assemblages. This justifies the hypothesis that, variation in discharge is the disturbance factor governing the macrofaunal composition temporally and spatially within and between patche

Social roles and aging from a life-span perspective

Este trabalho investigou os papéis sociais e as tarefas evolutivas desempenhados por adultos. O local escolhido para investigação foi um assentamento de famílias de baixa renda do Distrito Federal criado em 1989. Utilizou-se um questionário contendo 17 questões abertas e 15 questões fechadas, preenchido pela primeira autora durante uma visita domiciliar. Participaram 98 respondentes (73 F e 25 M), sendo 51 entre 50 e 59 anos e 47 a partir de 60 anos. Os resultados apontaram que este grupo é heterogêneo e que seus papéis sociais são influenciados pelas variáveis demográficas (idade, sexo, escolaridade, ocupação, naturalidade e estado civil) e também pelas variáveis relativas à moradia atual. Concluiu-se também que as expectativas sociais, o suporte social e a escolarização são fatores de suma importância para oferecer recursos para a otimização e compensação necessárias a um envelhecimento bem sucedido. __________________________________________________________________________________________________________ ABSTRACTThis study investigated the social roles and developmental tasks of adults. The study took place in a settlement of low-income families, created in The Federal District in 1989. Data were collected through a questionnaire composed of 17 open and 15 closed questions, administered by the first author during a home visit. There were 98 respondents, 73 female and 25 male, being 51 between 50 to 59 years old and 47 elders above the age of 60. The result indicated that this group is heterogeneous and that its social roles are influenced by the demographic variables - age, sex, educational level, work, place of the birth and marital status, as well for the relative variables to current residence. The data allow the conclusion that social expectations, social support and the educational level are important resources for the optimization and necessary compensation to successful aging

Average ground-state energy of finite Fermi systems

Semiclassical theories like the Thomas-Fermi and Wigner-Kirkwood methods give a good description of the smooth average part of the total energy of a Fermi gas in some external potential when the chemical potential is varied. However, in systems with a fixed number of particles N, these methods overbind the actual average of the quantum energy as N is varied. We describe a theory that accounts for this effect. Numerical illustrations are discussed for fermions trapped in a harmonic oscillator potential and in a hard wall cavity, and for self-consistent calculations of atomic nuclei. In the latter case, the influence of deformations on the average behavior of the energy is also considered.Comment: 10 pages, 8 figure

Discrete Symmetries in the Weyl Expansion for Quantum Billiards

We consider two and three-dimensional quantum billiards with discrete symmetries. We derive the first terms of the Weyl expansion for the level density projected onto the irreducible representations of the symmetry group. As an illustration the method is applied to the icosahedral billiard. The paper was published in J. Phys. A /27/ (1994) 4317-4323Comment: 8 printed pages Latex fil

Semiclassical theory for spatial density oscillations in fermionic systems

We investigate the particle and kinetic-energy densities for a system of $N$ fermions bound in a local (mean-field) potential V(\bfr). We generalize a recently developed semiclassical theory [J. Roccia and M. Brack, Phys. Rev.\ Lett. {\bf 100}, 200408 (2008)], in which the densities are calculated in terms of the closed orbits of the corresponding classical system, to $D>1$ dimensions. We regularize the semiclassical results $(i)$ for the U(1) symmetry breaking occurring for spherical systems at $r=0$ and $(ii)$ near the classical turning points where the Friedel oscillations are predominant and well reproduced by the shortest orbit going from $r$ to the closest turning point and back. For systems with spherical symmetry, we show that there exist two types of oscillations which can be attributed to radial and non-radial orbits, respectively. The semiclassical theory is tested against exact quantum-mechanical calculations for a variety of model potentials. We find a very good overall numerical agreement between semiclassical and exact numerical densities even for moderate particle numbers $N$. Using a "local virial theorem", shown to be valid (except for a small region around the classical turning points) for arbitrary local potentials, we can prove that the Thomas-Fermi functional $\tau_{\text{TF}}[\rho]$ reproduces the oscillations in the quantum-mechanical densities to first order in the oscillating parts.Comment: LaTeX, 22pp, 15 figs, 1 table, to be published in Phys. Rev.

Families of spherical caps: spectra and ray limit

We consider a family of surfaces of revolution ranging between a disc and a hemisphere, that is spherical caps. For this family, we study the spectral density in the ray limit and arrive at a trace formula with geodesic polygons describing the spectral fluctuations. When the caps approach the hemisphere the spectrum becomes equally spaced and highly degenerate whereas the derived trace formula breaks down. We discuss its divergence and also derive a different trace formula for this hemispherical case. We next turn to perturbative corrections in the wave number where the work in the literature is done for either flat domains or curved without boundaries. In the present case, we calculate the leading correction explicitly and incorporate it into the semiclassical expression for the fluctuating part of the spectral density. To the best of our knowledge, this is the first calculation of such perturbative corrections in the case of curvature and boundary.Comment: 28 pages, 7 figure

Exploring differential item functioning in the SF-36 by demographic, clinical, psychological and social factors in an osteoarthritis population

The SF-36 is a very commonly used generic measure of health outcome in osteoarthritis (OA). An important, but frequently overlooked, aspect of validating health outcome measures is to establish if items work in the same way across subgroup of a population. That is, if respondents have the same 'true' level of outcome, does the item give the same score in different subgroups or is it biased towards one subgroup or another. Differential item functioning (DIF) can identify items that may be biased for one group or another and has been applied to measuring patient reported outcomes. Items may show DIF for different conditions and between cultures, however the SF-36 has not been specifically examined in an osteoarthritis population nor in a UK population. Hence, the aim of the study was to apply the DIF method to the SF-36 for a UK OA population. The sample comprised a community sample of 763 people with OA who participated in the Somerset and Avon Survey of Health. The SF-36 was explored for DIF with respect to demographic, social, clinical and psychological factors. Well developed ordinal regression models were used to identify DIF items. Results: DIF items were found by age (6 items), employment status (6 items), social class (2 items), mood (2 items), hip v knee (2 items), social deprivation (1 item) and body mass index (1 item). Although the impact of the DIF items rarely had a significant effect on the conclusions of group comparisons, in most cases there was a significant change in effect size. Overall, the SF-36 performed well with only a small number of DIF items identified, a reassuring finding in view of the frequent use of the SF-36 in OA. Nevertheless, where DIF items were identified it would be advisable to analyse data taking account of DIF items, especially when age effects are the focus of interest

Quantum chaos in a deformable billiard: Applications to quantum dots

We perform a detailed numerical study of energy-level and wavefunction statistics of a deformable quantum billiard focusing on properties relevant to semiconductor quantum dots. We consider the family of Robnik billiards generated by simple conformal maps of the unit disk; the shape of this family of billiards may be varied continuously at fixed area by tuning the parameters of the map. The classical dynamics of these billiards is well-understood and this allows us to study the quantum properties of subfamilies which span the transition from integrability to chaos as well as families at approximately constant degree of chaoticity (Kolmogorov entropy). In the regime of hard chaos we find that the statistical properties of interest are well-described by random-matrix theory and completely insensitive to the particular shape of the dot. However in the nearly-integrable regime non-universal behavior is found. Specifically, the level-width distribution is well-described by the predicted $\chi^2$ distribution both in the presence and absence of magnetic flux when the system is fully chaotic; however it departs substantially from this behavior in the mixed regime. The chaotic behavior corroborates the previously predicted behavior of the peak-height distribution for deformed quantum dots. We also investigate the energy-level correlation functions which are found to agree well with the behavior calculated for quasi-zero-dimensional disordered systems.Comment: 25 pages (revtex 3.0). 16 figures are available by mail or fax upon request at [email protected]