18 research outputs found

    Polio eradication in Ghana: past, present, and future

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    IntroductionGhana joined the Global Polio Eradication Initiative in 1996 to interrupt wild poliovirus transmission in the country. This was a collaborative effort by the Ghana Health Service (Disease Surveillance Department and the Expanded Program on Immunization) and the Polio Laboratory in the Noguchi Memorial Institute for Medical Research, University of Ghana.MethodsThe polio surveillance started from the southern regions and was extended to the northern regions over time. Surveillance officers were sensitized to improve case detection. The most important surveillance indicators—annualized non-polio AFP rate and stool adequacy—continued to improve, and the WHO targets for laboratory indicators of timeliness were met. The introduction of the oral polio vaccine in 1978 by the Expanded Program on Immunization led to a significant reduction in polio cases. The routine immunization coverage increased from 72% in 1999 to 94% in 2007, with an improvement in supplementary immunization activities.ResultsMolecular characterization of wild poliovirus from Ghana between 1995 and 2008 and vaccine-derived poliovirus from 2019 to 2022 revealed that the transmission of wild poliovirus and vaccine-derived poliovirus can be interrupted with active acute flaccid paralysis surveillance and adequate and efficient implementation of immunization activities. The country attained a polio- free status in 2015 after successfully submitting documentation to the Regional Certification Committee. Analysis of vaccine-derived polioviruses contributed to a better understanding of the poliovirus transmission, showing that the VDPV is indistinguishable from wild poliovirus and therefore poses a risk as a source of paralytic polio in a polio-free world.DiscussionGhana will sustain efforts to maintain polio- free status; intensify routine immunization to improve equity and OPV3 coverage; improve vaccine management and logistics; and enhance surveillance and outbreak preparedness, community engagement, and mobilization to eliminate the circulating vaccine-derived poliovirus. Furthermore, the country will strengthen partnerships with the WHO, UNICEF, CDC, Rotary International, and other stakeholders and secure dedicated funding to ensure consistent support for immunization and surveillance activities

    The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.

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    Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing in Africa over the past year has led to a major increase in the number of sequences that have been generated and used to track the pandemic on the continent, a number that now exceeds 100,000 genomes. Our results show an increase in the number of African countries that are able to sequence domestically and highlight that local sequencing enables faster turnaround times and more-regular routine surveillance. Despite limitations of low testing proportions, findings from this genomic surveillance study underscore the heterogeneous nature of the pandemic and illuminate the distinct dispersal dynamics of variants of concern-particularly Alpha, Beta, Delta, and Omicron-on the continent. Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve while the continent faces many emerging and reemerging infectious disease threats. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

    The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

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    INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century
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