Lightcurves of Type Ia Supernovae from Near the Time of Explosion

We present a set of 11 type Ia supernova (SN Ia) lightcurves with dense, pre-maximum sampling. These supernovae (SNe), in galaxies behind the Large Magellanic Cloud (LMC), were discovered by the SuperMACHO survey. The SNe span a redshift range of z = 0.11 - 0.35. Our lightcurves contain some of the earliest pre-maximum observations of SNe Ia to date. We also give a functional model that describes the SN Ia lightcurve shape (in our VR-band). Our function uses the "expanding fireball" model of Goldhaber et al. (1998) to describe the rising lightcurve immediately after explosion but constrains it to smoothly join the remainder of the lightcurve. We fit this model to a composite observed VR-band lightcurve of three SNe between redshifts of 0.135 to 0.165. These SNe have not been K-corrected or adjusted to account for reddening. In this redshift range, the observed VR-band most closely matches the rest frame V-band. Using the best fit to our functional description of the lightcurve, we find the time between explosion and observed VR-band maximum to be 17.6+-1.3(stat)+-0.07(sys) rest-frame days for a SN Ia with a VR-band Delta m_{-10} of 0.52mag. For the redshifts sampled, the observed VR-band time-of-maximum brightness should be the same as the rest-frame V-band maximum to within 1.1 rest-frame days.Comment: 35 pages, 18 figures, 15 tables; Higher quality PDF available at http://ctiokw.ctio.noao.edu/~sm/sm/SNrise/index.html; AJ accepte

Long-term impact of childhood adversity: Examining outcomes across development and across generations

Exposure to childhood adversity (e.g., abuse, neglect, poverty) has far-reaching mental and behavioral health consequences, extending across the lifespan and – in some cases – across generations. However, much of the empirical work in this area is limited by (1) retrospective or single-informant reports of childhood adversity, (2) study designs that are cross-sectional or limited in their length of follow-up, and (3) data analytic techniques that fail to capture the nuanced, complex, bidirectional developmental processes that influence children’s development. This three-paper staple dissertation investigated the long-term and intergenerational impact of childhood adversity on individuals’ externalizing problems in childhood, substance use patterns in early adulthood, and depression, stress, and parenting in adulthood. All data come from the Longitudinal Studies of Child Abuse and Neglect. Study 1 (published; N = 768) identifies an intergenerational mediation pathway from (a) caregivers’ childhood experiences of victimization to (b) caregivers’ current levels of depression and stress to (c) subsequent abusive parenting practices toward their 8-year-old children (standardized indirect effect = .04, 95% CI [.02, .08]). Study 2 (N = 818) extends Study 1 one by examining the complex, reciprocal interplay between caregivers’ depressive symptoms, harsh parenting tactics, and their children’s externalizing problems using random-intercept cross-lagged panel modeling over a 10-year period (βs = 0.07 – 0.14, ps < .05). Study 3 (N = 483) followed a subset of children from Studies 1 and 2 into early adulthood, identifying four distinct latent classes of substance use (AIC = 2537.40, BIC = 2700.42, Lo-Mendell-Rubin likelihood ratio test p = .03, bootstrapped likelihood ratio test p < .001) and documenting associations between class membership and prospectively-measured childhood adversity (χ2 = 4.42 – 27.87, ps < .05). This research contributes substantially to the literature by characterizing the long-term impact of childhood adversity using multi-generational, prospective data spanning over 20 years, which very few other studies have accomplished. Findings inform clinical practice and policy efforts by delineating how childhood victimization leads to behavior problems and substance use in subsequent generations, and by doing so, highlights opportunities to break long-term cycles of violence and mental health

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

Shigella are human-adapted Escherichia coli that have gained the ability to invade the human gut mucosa and cause dysentery1,2, spreading efficiently via low-dose fecal-oral transmission3,4. Historically, S. sonnei has been predominantly responsible for dysentery in developed countries, but is now emerging as a problem in the developing world, apparently replacing the more diverse S. flexneri in areas undergoing economic development and improvements in water quality4-6. Classical approaches have shown S. sonnei is genetically conserved and clonal7. We report here whole-genome sequencing of 132 globally-distributed isolates. Our phylogenetic analysis shows that the current S. sonnei population descends from a common ancestor that existed less than 500 years ago and has diversified into several distinct lineages with unique characteristics. Our analysis suggests the majority of this diversification occurred in Europe, followed by more recent establishment of local pathogen populations in other continents predominantly due to the pandemic spread of a single, rapidly-evolving, multidrug resistant lineage

Novel opsin gene variation in large-bodied, diurnal lemurs

Some primate populations include both trichromatic and dichromatic (red-green colour blind) individuals due to allelic variation at the X-linked opsin locus. This polymorphic trichromacy is well described in day-active New World monkeys. Less is known about colour vision in Malagasy lemurs, but, unlike New World monkeys, only some day-active lemurs are polymorphic, while others are dichromatic. The evolutionary pressures underlying these differences in lemurs are unknown, but aspects of species ecology, including variation in activity pattern, are hypothesized to play a role. Limited data on X-linked opsin variation in lemurs make such hypotheses difficult to evaluate. We provide the first detailed examination of X-linked opsin variation across a lemur clade (Indriidae). We sequenced the X-linked opsin in the most strictly diurnal and largest extant lemur, Indri indri, and nine species of smaller, generally diurnal indriids (Propithecus). Although nocturnal Avahi (sister taxon to Propithecus) lacks a polymorphism, at least eight species of diurnal indriids have two or more X-linked opsin alleles. Four rainforest-living taxa-I. indri and the three largest Propithecus species-have alleles not previously documented in lemurs. Moreover, we identified at least three opsin alleles in Indri with peak spectral sensitivities similar to some New World monkeys

Fashion-Oriented Image Captioning with External Knowledge Retrieval and Fully Attentive Gates

Research related to fashion and e-commerce domains is gaining attention in computer vision and multimedia communities. Following this trend, this article tackles the task of generating fine-grained and accurate natural language descriptions of fashion items, a recently-proposed and under-explored challenge that is still far from being solved. To overcome the limitations of previous approaches, a transformer-based captioning model was designed with the integration of external textual memory that could be accessed through k-nearest neighbor (kNN) searches. From an architectural point of view, the proposed transformer model can read and retrieve items from the external memory through cross-attention operations, and tune the flow of information coming from the external memory thanks to a novel fully attentive gate. Experimental analyses were carried out on the fashion captioning dataset (FACAD) for fashion image captioning, which contains more than 130k fine-grained descriptions, validating the effectiveness of the proposed approach and the proposed architectural strategies in comparison with carefully designed baselines and state-of-the-art approaches. The presented method constantly outperforms all compared approaches, demonstrating its effectiveness for fashion image captioning

Space Telescope and Optical Reverberation Mapping Project. V. Optical Spectroscopic Campaign and Emission-line Analysis for NGC 5548

We present the results of an optical spectroscopic monitoring program targeting NGC 5548 as part of a larger multiwavelength reverberation mapping campaign. The campaign spanned 6 months and achieved an almost daily cadence with observations from five ground-based telescopes. The Hβ and He ii λ4686 broad emission-line light curves lag that of the 5100 +-optical continuum by 4.17+0.36-0.36 and 0.79+0.35-0.34 days, respectively. The Hβ lag relative to the 1158 ultraviolet continuum light curve measured by the Hubble Space Telescope is ∼50% longer than that measured against the optical continuum, and the lag difference is consistent with the observed lag between the optical and ultraviolet continua. This suggests that the characteristic radius of the broad-line region is ∼50% larger than the value inferred from optical data alone. We also measured velocity-resolved emission-line lags for Hβ and found a complex velocity-lag structure with shorter lags in the line wings, indicative of a broad-line region dominated by Keplerian motion. The responses of both the Hβ and He ii emission lines to the driving continuum changed significantly halfway through the campaign, a phenomenon also observed for C iv, Lyα, He ii(+O iii]), and Si iv(+O iv]) during the same monitoring period. Finally, given the optical luminosity of NGC 5548 during our campaign, the measured Hβ lag is a factor of five shorter than the expected value implied by the R BLR-L AGN relation based on the past behavior of NGC 5548

Will an exotic, competitive egg parasitoid displace a native larval parasitoid?.

Fopius arisanus Soman (Hymenoptera: Braconidae) is a generalist tephritid egg parasitoid from the Indo-Pacific region introduced to Brazil in 2012 to control the exotic fruit fly pest Bactrocera carambolae Drew & Hancock (Diptera: Tephritidae) in the northern region. Doryctobracon areolatus Szépligeti (Hymenoptera: Braconidae) is a native generalist parasitoid of second instar larval fruit flies from Central and South America. Because both species of fruit fly parasitoids share some genera of fruit fly hosts, we evaluated if the commercial release of F. arisanus could cause adverse effects (e.g., competitive displacement) on the native parasitoid. Host preference and competitive ability were compared using as hosts the native Anastrepha fraterculus Wiedemann (Diptera: Tephritidae) and the exotic Ceratitis capitata Wiedemann (Diptera: Tephritidae) fruit fly species. To evaluate host preference, choice and no-choice experiments were conducted with lines of F. arisanus reared from each of the hosts. Laboratory studies showed that F. arisanus accepted only 2-3% of the native hosts compared to 34-41% of the exotic hosts under no choice conditions, with similar results when given a choice of native and exotic hosts. The field cage choice study showed similar results when F. arisanus was reared on the exotic host, but when reared on the native host, F. arisanus parasitized more of the native host than when reared on the exotic host. However, both lines of the parasitoid preferred the exotic host. To evaluate competitive ability, experiments with both species together and separate were conducted in the laboratory and in field cages. Both experiments showed that F. arisanus had no measurable detrimental effect on the native parasitoid in either the native or exotic host. Indeed, the native parasitoid was consistently the superior competitor in native host even though it parasitized larvae while F. arisanus is an egg parasitoid. These results indicated that F. arisanus interacted minimally with the native parasitoid on the native host, and while it interacted with the native parasitoid on the exotic host, it did not detrimentally affect it. Thus, F. arisanus is unlikely to cause adverse effects on the native parasitoid, D. areolatus in Brazil.Edited by Heikki M. T. Hokkanen; Ingeborg Menzler-Hokkanen

ISCOMATRIX vaccines mediate CD8+ T-cell cross-priming by a MyD88-dependent signaling pathway

Generating a cytotoxic CD8+ T-cell response that can eradicate malignant cells is the primary objective of cancer vaccine strategies. In this study we have characterized the innate and adaptive immune response to the ISCOMATRIX adjuvant, and the ability of vaccine antigens formulated with this adjuvant to promote antitumor immunity. ISCOMATRIX adjuvant led to a rapid innate immune cell response at the injection site, followed by the activation of natural killer and dendritic cells (DC) in regional draining lymph nodes. Strikingly, major histocompatibility complex (MHC) class I cross-presentation by CD8α+ and CD8α− DCs was enhanced by up to 100-fold when antigen was formulated with ISCOMATRIX adjuvant. These coordinated features enabled efficient CD8+ T-cell cross-priming, which exhibited prophylactic and therapeutic tumoricidal activity. The therapeutic efficacy of an ISCOMATRIX vaccine was further improved when co-administered with an anti-CD40 agonist antibody, suggesting that ISCOMATRIX-based vaccines may combine favorably with other immune modifiers in clinical development to treat cancer. Finally, we identified a requirement for the myeloid differentiation primary response gene 88 (MyD88) adapter protein for both innate and adaptive immune responses to ISCOMATRIX vaccines in vivo. Taken together, our findings support the utility of the ISCOMATRIX adjuvant for use in the development of novel vaccines, particularly those requiring strong CD8+ T-cell immune responses, such as therapeutic cancer vaccines

The wide-field, multiplexed, spectroscopic facility WEAVE: Survey design, overview, and simulated implementation

WEAVE, the new wide-field, massively multiplexed spectroscopic survey facility for the William Herschel Telescope, will see first light in late 2022. WEAVE comprises a new 2-degree field-of-view prime-focus corrector system, a nearly 1000-multiplex fibre positioner, 20 individually deployable ‘mini’ integral field units (IFUs), and a single large IFU. These fibre systems feed a dual-beam spectrograph covering the wavelength range 366-959 nm at R ~ 5000, or two shorter ranges at R ~ 20¿000. After summarising the design and implementation of WEAVE and its data systems, we present the organisation, science drivers and design of a five- to seven-year programme of eight individual surveys to: (i) study our Galaxy’s origins by completing Gaia’s phase-space information, providing metallicities to its limiting magnitude for ~3 million stars and detailed abundances for ~1.5 million brighter field and open-cluster stars; (ii) survey ~0.4 million Galactic-plane OBA stars, young stellar objects and nearby gas to understand the evolution of young stars and their environments; (iii) perform an extensive spectral survey of white dwarfs; (iv) survey ~400 neutral-hydrogen-selected galaxies with the IFUs; (v) study properties and kinematics of stellar populations and ionised gas in z < 0.5 cluster galaxies; (vi) survey stellar populations and kinematics in ~25¿000 field galaxies at 0.3 ¿ z ¿ 0.7; (vii) study the cosmic evolution of accretion and star formation using >1 million spectra of LOFAR-selected radio sources; (viii) trace structures using intergalactic/circumgalactic gas at z > 2. Finally, we describe the WEAVE Operational Rehearsals using the WEAVE Simulator.Postprint (published version

Novel Plasmids and Resistance Phenotypes in Yersinia pestis: Unique Plasmid Inventory of Strain Java 9 Mediates High Levels of Arsenic Resistance

Growing evidence suggests that the plasmid repertoire of Yersinia pestis is not restricted to the three classical virulence plasmids. The Java 9 strain of Y. pestis is a biovar Orientalis isolate obtained from a rat in Indonesia. Although it lacks the Y. pestis-specific plasmid pMT, which encodes the F1 capsule, it retains virulence in mouse and non-human primate animal models. While comparing diverse Y. pestis strains using subtractive hybridization, we identified sequences in Java 9 that were homologous to a Y. enterocolitica strain carrying the transposon Tn2502, which is known to encode arsenic resistance. Here we demonstrate that Java 9 exhibits high levels of arsenic and arsenite resistance mediated by a novel promiscuous class II transposon, named Tn2503. Arsenic resistance was self-transmissible from Java 9 to other Y. pestis strains via conjugation. Genomic analysis of the atypical plasmid inventory of Java 9 identified pCD and pPCP plasmids of atypical size and two previously uncharacterized cryptic plasmids. Unlike the Tn2502-mediated arsenic resistance encoded on the Y. enterocolitica virulence plasmid; the resistance loci in Java 9 are found on all four indigenous plasmids, including the two novel cryptic plasmids. This unique mobilome introduces more than 105 genes into the species gene pool. The majority of these are encoded by the two entirely novel self-transmissible plasmids, which show partial homology and synteny to other enterics. In contrast to the reductive evolution in Y. pestis, this study underlines the major impact of a dynamic mobilome and lateral acquisition in the genome evolution of the plague bacterium