Nitrogen retention in the riparian zone of watersheds underlain by discontinuous permafrost

Thesis (M.S.) University of Alaska Fairbanks, 2005Riparian zones function as important ecotones for reducing nitrate concentration in groundwater and inputs into streams. In the boreal forest of interior Alaska, permafrost confines subsurface flow through the riparian zone to shallow organic horizons, where plant uptake of nitrate and denitrification are typically high. Two research questions were addressed in this study: 1) how does riparian zone nitrogen retention vary in watersheds underlain by discontinuous permafrost, and 2) what is the contribution of denitrification to riparian zone nitrogen retention? To estimate the contribution of the riparian zone to watershed nitrogen retention, I analyzed groundwater chemistry using an end-member mixing model. To assess the importance of denitrification as a mechanism of nitrogen retention, I conducted field denitrification assays using the acetylene block technique. Over the summer, nitrogen retention averaged 0.75 and 0.22 mmol N m⁻² d⁻¹ in low and high permafrost watersheds, respectively. Compared with the fluvial export of nitrogen, the retention rate of nitrogen in the riparian zone is 10 - 15% of the loss rate in stream flow. Denitrification accounted for a small proportion (3%) of total nitrogen retention in the riparian zone. Variation in nitrogen retention between watersheds did not account for differences in stream nitrate concentration between watersheds.Introduction -- Factors controlling denitrification -- Riparian zones as nutrient filters -- Models of riparian zone function -- Permafrost and hydrology -- Caribou Poker Creeks Research Watershed (CPCRW) -- References -- Nitrogen retention in the riparian zone of watersheds underlain by discontinuous permafrost -- Conclusions -- References

Importance of soil thermal regime in terrestrial ecosystem carbon dynamics in the circumpolar north

© The Author(s), 2016. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Global and Planetary Change 142 (2016): 28-40, doi:10.1016/j.gloplacha.2016.04.011.In the circumpolar north (45-90°N), permafrost plays an important role in vegetation and carbon (C) dynamics. Permafrost thawing has been accelerated by the warming climate and exerts a positive feedback to climate through increasing soil C release to the atmosphere. To evaluate the influence of permafrost on C dynamics, changes in soil temperature profiles should be considered in global C models. This study incorporates a sophisticated soil thermal model (STM) into a dynamic global vegetation model (LPJ-DGVM) to improve simulations of changes in soil temperature profiles from the ground surface to 3 m depth, and its impacts on C pools and fluxes during the 20th and 21st centuries.With cooler simulated soil temperatures during the summer, LPJ-STM estimates ~0.4 Pg C yr-1 lower present-day heterotrophic respiration but ~0.5 Pg C yr-1 higher net primary production than the original LPJ model resulting in an additional 0.8 to 1.0 Pg C yr-1 being sequestered in circumpolar ecosystems. Under a suite of projected warming scenarios, we show that the increasing active layer thickness results in the mobilization of permafrost C, which contributes to a more rapid increase in heterotrophic respiration in LPJ-STM compared to the stand-alone LPJ model. Except under the extreme warming conditions, increases in plant production due to warming and rising CO2, overwhelm the enhanced ecosystem respiration so that both boreal forest and arctic tundra ecosystems remain a net C sink over the 21st century. This study highlights the importance of considering changes in the soil thermal regime when quantifying the C budget in the circumpolar north.This research is supported by funded projects to Q. Z. National Science Foundation (NSF- 1028291 and NSF- 0919331), the NSF Carbon and Water in the Earth Program (NSF-0630319), the NASA Land Use and Land Cover Change program (NASA- NNX09AI26G), and Department of Energy (DE-FG02-08ER64599).2017-05-0

The effects of permafrost degradation on soil carbon dynamics in Alaska's boreal region

Dissertation (Ph.D.) University of Alaska Fairbanks, 2010High-latitude regions store large quantities of organic carbon (C) in permafrost soils and peatlands, accounting for nearly half of the global belowground C pool. Projected climate warming over the next century will likely drive widespread thawing of near-surface permafrost and mobilization of soil C from deep soil horizons. However, the processes controlling soil C accumulation and loss following permafrost thaw are not well understood. To improve our understanding of these processes, I examined the effects of permafrost thaw on soil C dynamics in forested upland and peatland ecosystems of Alaska's boreal region. In upland forests, soil C accumulation and loss was governed by the complex interaction of wildfire and permafrost. Fluctuations in active layer depth across stand age and fire cycles determined the proportion of soil C in frozen or unfrozen soil, and in turn, the vulnerability of soil C to decomposition. Under present-day climate conditions, the presence of near-surface permafrost aids C stabilization through the upward movement of the permafrost table with post-fire ecosystem recovery. However, sensitivity analyses suggest that projected increases in air temperature and fire severity will accelerate permafrost thaw and soil C loss from deep mineral horizons. In the lowlands, permafrost thaw and collapse-scar bog formation resulted in the dramatic redistribution of soil water, modifying soil thermal and C dynamics. Water impoundment in collapse-scar bogs enhanced soil C accumulation in shallow peat horizons, while allowing for high rates of soil C loss from deep inundated peat horizons. Accumulation rates at the surface were not sufficient to balance deep C losses, resulting in a net loss of 26 g C m⁻² y⁻¹ from the entire peat column during the 3000 years following thaw. Findings from these studies highlight the vulnerability of soil C in Alaska's boreal region to future climate warming and permafrost thaw. As a result, permafrost thaw and soil C release from boreal soils to the atmosphere should function as a positive feedback to the climate system

Th1 Cytokine-Secreting Recombinant Mycobacterium bovis Bacillus Calmette-Guérin and Prospective Use in Immunotherapy of Bladder Cancer

Intravesical instillation of Mycobacterium bovis bacillus Calmette-Guérin (BCG) has been used for treating bladder cancer for 3 decades. However, BCG therapy is ineffective in approximately 30–40% of cases. Since evidence supports the T helper type 1 (Th1) response to be essential in BCG-induced tumor destruction, studies have focused on enhancing BCG induction of Th1 immune responses. Although BCG in combination with Th1 cytokines (e.g., interferon-α) has demonstrated improved efficacy, combination therapy requires multiple applications and a large quantity of cytokines. On the other hand, genetic manipulation of BCG to secrete Th1 cytokines continues to be pursued with considerable interest. To date, a number of recombinant BCG (rBCG) strains capable of secreting functional Th1 cytokines have been developed and demonstrated to be superior to BCG. This paper discusses current rBCG research, concerns, and future directions with an intention to inspire the development of this very promising immunotherapeutic modality for bladder cancer

Global survey of the frequency of atrial fibrillation-associated stroke: embolic stroke of undetermined source global registry

Background and Purpose—Atrial fibrillation (AF) is increasingly recognized as the single most important cause of disabling ischemic stroke in the elderly. We undertook an international survey to characterize the frequency of AF-associated stroke, methods of AF detection, and patient features. Methods—Consecutive patients hospitalized for ischemic stroke in 2013 to 2014 were surveyed from 19 stroke research centers in 19 different countries. Data were analyzed by global regions and World Bank income levels. Results—Of 2144 patients with ischemic stroke, 590 (28%; 95% confidence interval, 25.6–29.5) had AF-associated stroke, with highest frequencies in North America (35%) and Europe (33%) and lowest in Latin America (17%). Most had a history of AF before stroke (15%) or newly detected AF on electrocardiography (10%); only 2% of patients with ischemic stroke had unsuspected AF detected by poststroke cardiac rhythm monitoring. The mean age and 30-day mortality rate of patients with AF-associated stroke (75 years; SD, 11.5 years; 10%; 95% confidence interval, 7.6–12.6, respectively) were substantially higher than those of patients without AF (64 years; SD, 15.58 years; 4%; 95% confidence interval, 3.3–5.4; P<0.001 for both comparisons). There was a strong positive correlation between the mean age and the frequency of AF (r=0.76; P=0.0002). Conclusions—This cross-sectional global sample of patients with recent ischemic stroke shows a substantial frequency of AF-associated stroke throughout the world in proportion to the mean age of the stroke population. Most AF is identified by history or electrocardiography; the yield of conventional short-duration cardiac rhythm monitoring is relatively low. Patients with AF-associated stroke were typically elderly (>75 years old) and more often women

Competition effects regulating the composition of the microRNA pool

MicroRNAS (miRNAs) are short non-coding RNAs that can repress mRNA translation to regulate protein synthesis. During their maturation, multiple types of pre-miRNAs compete for a shared pool of the enzyme Dicer. It is unknown how this competition for a shared resource influences the relative expression of mature miRNAs. We study this process in a computational model of pre-miRNA maturation, fitted to in vitro Drosophila S2 cell data. We find that those pre-miRNAs that efficiently interact with Dicer outcompete other pre-miRNAs, when Dicer is scarce. To test our model predictions, we re-analysed previously published ex vivo mouse striatum data with reduced Dicer1 expression. We calculated a proxy measure for pre-miRNA affinity to TRBP (a protein that loads pre-miRNAs to Dicer). This measures well-predicted mature miRNA levels in the data, validating our assumptions. We used this as a basis to test the the model’s predictions through further analysis of the data. We found that pre-miRNAs with strong TRBP association are over-represented in competition conditions, consistent with the modelling. Finally using further simulations, we discovered that pre-miRNAs with low maturation rates can affect the mature miRNA pool via competition among pre-miRNAs. Overall, this work presents evidence of pre-miRNA competition regulating the composition of mature miRNAs

Thermal prestress in composite compliant shell mechanisms

This paper explores the ability to tailor the mechanical properties of composite compliant shell mechanisms, by exploiting the thermal prestress introduced during the composite laminate cure. An extension of an analytical tape spring model with composite thermal analysis is presented, and the effect of the thermal prestress is studied by means of energy landscapes for the cylindrical composite shells. Tape springs that would otherwise be monostable structures become bistable and exhibit greater ranges of low-energy twisting with thermally induced prestress. Predicted shell geometries are compared with finite element (FE) results and manufactured samples, showing good agreement between all approaches. Wider challenges around the manufacture of prestressed composite compliant mechanisms are discussed

“It’s just some numbers”:using cognitive informational styles theory to understand behaviour and expectations in relation to blood test monitoring for long term conditions

Background: Annual monitoring blood tests assess long term condition [LTC] disease progression, treatment response and associated diseases. Patients with LTCs who want to be more involved in their health. Drawing upon the patient activation and cognitive informational styles theory we wanted to better understand patient and healthcare professional behaviour, views and beliefs in relation to blood test monitoring for long term conditions. Methods: As part of the Optimal Testing study we conducted qualitative in-depth-interviews. A topic guide was developed with PPI input. Patients and clinicians were purposively sampled from 4 GP practices, representing a range in social deprivation scores, patient list size and location (rural/urban). Interviews were conducted with patients living with Type 2 Diabetes , hypertension or chronic kidney disease (N=21); and with a range of health care professionals [HCP], including GPs, nurses, health care assistants, practice pharmacists and phlebotomists (N=21). Informed consent was taken for each interview. Interviews were recorded, transcribed verbatim and uploaded into NVIVO software. Reflexive thematic analysis was conducted. HCP and patient transcripts were coded separately and sequentially, before comparative analysis across clinician/patient coding. Theoretical codes were introduced after inductive coding had been completed as a way of developing the analytic insights of the thematically coded data. Drawing upon informational style theories, codes were created for ‘monitors’ (those who actively seek out information) and ‘blunters’ (those who avoid information) and applied across the patient data set. Patterns were explored between deductive theoretical coding and inductive thematic coding. Results: We developed a typology of patient blunter and monitor characteristics and identified four key patient behaviour patterns in this typology: seeking out information about tests/test results, making blood test appointments, asking questions about tests/test results during or after a consultation, and attending appointments. Our results explore the links between paternalism and blunter or monitor behaviours; clinicians descriptions of monitor type behaviours; clinicians descriptions of blunter type behaviour; psycho-social explanations for monitor versus blunter behaviours; differences between HCP role and views of blunter and monitor behaviours; factors that may reinforce blunter style behaviour; the use of coercion versus better information to manage blunter style preferences. Conclusions: LTC blood test information needs to be presented in a way that turns numeracy (the ability of patients to understand blood test numbers) into a form of illness knowledge. It is only then that we are more likely to see blood test result communication leading to improved patient outcomes. Using the monitor/blunter typology has helped us to better understand patient preferences for information and the way this interacts with clinician behaviours and attitudes, which will inform our development of an intervention aimed at improving communication