A morphological algorithm for improving radio-frequency interference detection

A technique is described that is used to improve the detection of radio-frequency interference in astronomical radio observatories. It is applied on a two-dimensional interference mask after regular detection in the time-frequency domain with existing techniques. The scale-invariant rank (SIR) operator is defined, which is a one-dimensional mathematical morphology technique that can be used to find adjacent intervals in the time or frequency domain that are likely to be affected by RFI. The technique might also be applicable in other areas in which morphological scale-invariant behaviour is desired, such as source detection. A new algorithm is described, that is shown to perform quite well, has linear time complexity and is fast enough to be applied in modern high resolution observatories. It is used in the default pipeline of the LOFAR observatory.Comment: Accepted for publication in A&

Post-correlation radio frequency interference classification methods

We describe and compare several post-correlation radio frequency interference classification methods. As data sizes of observations grow with new and improved telescopes, the need for completely automated, robust methods for radio frequency interference mitigation is pressing. We investigated several classification methods and find that, for the data sets we used, the most accurate among them is the SumThreshold method. This is a new method formed from a combination of existing techniques, including a new way of thresholding. This iterative method estimates the astronomical signal by carrying out a surface fit in the time-frequency plane. With a theoretical accuracy of 95% recognition and an approximately 0.1% false probability rate in simple simulated cases, the method is in practice as good as the human eye in finding RFI. In addition it is fast, robust, does not need a data model before it can be executed and works in almost all configurations with its default parameters. The method has been compared using simulated data with several other mitigation techniques, including one based upon the singular value decomposition of the time-frequency matrix, and has shown better results than the rest.Comment: 14 pages, 12 figures (11 in colour). The software that was used in the article can be downloaded from http://www.astro.rug.nl/rfi-software

Wide-field LOFAR-LBA power-spectra analyses: Impact of calibration, polarization leakage and ionosphere

Contamination due to foregrounds (Galactic and Extra-galactic), calibration errors and ionospheric effects pose major challenges in detection of the cosmic 21 cm signal in various Epoch of Reionization (EoR) experiments. We present the results of a pilot study of a field centered on 3C196 using LOFAR Low Band (56-70 MHz) observations, where we quantify various wide field and calibration effects such as gain errors, polarized foregrounds, and ionospheric effects. We observe a `pitchfork' structure in the 2D power spectrum of the polarized intensity in delay-baseline space, which leaks into the modes beyond the instrumental horizon (EoR/CD window). We show that this structure largely arises due to strong instrumental polarization leakage ($\sim30\%$) towards {Cas\,A} ($\sim21$ kJy at 81 MHz, brightest source in northern sky), which is far away from primary field of view. We measure an extremely small ionospheric diffractive scale ($r_{\text{diff}} \approx 430$ m at 60 MHz) towards {Cas\,A} resembling pure Kolmogorov turbulence compared to $r_{\text{diff}} \sim3 - 20$ km towards zenith at 150 MHz for typical ionospheric conditions. This is one of the smallest diffractive scales ever measured at these frequencies. Our work provides insights in understanding the nature of aforementioned effects and mitigating them in future Cosmic Dawn observations (e.g. with SKA-low and HERA) in the same frequency window.Comment: 20 pages, 11 figures, accepted for publication in MNRA

Calibration and Stokes Imaging with Full Embedded Element Primary Beam Model for the Murchison Widefield Array

15 pages, 11 figures. Accepted for publication in PASA. © Astronomical Society of Australia 2017The Murchison Widefield Array (MWA), located in Western Australia, is one of the low-frequency precursors of the international Square Kilometre Array (SKA) project. In addition to pursuing its own ambitious science program, it is also a testbed for wide range of future SKA activities ranging from hardware, software to data analysis. The key science programs for the MWA and SKA require very high dynamic ranges, which challenges calibration and imaging systems. Correct calibration of the instrument and accurate measurements of source flux densities and polarisations require precise characterisation of the telescope's primary beam. Recent results from the MWA GaLactic Extragalactic All-sky MWA (GLEAM) survey show that the previously implemented Average Embedded Element (AEE) model still leaves residual polarisations errors of up to 10-20 % in Stokes Q. We present a new simulation-based Full Embedded Element (FEE) model which is the most rigorous realisation yet of the MWA's primary beam model. It enables efficient calculation of the MWA beam response in arbitrary directions without necessity of spatial interpolation. In the new model, every dipole in the MWA tile (4 x 4 bow-tie dipoles) is simulated separately, taking into account all mutual coupling, ground screen and soil effects, and therefore accounts for the different properties of the individual dipoles within a tile. We have applied the FEE beam model to GLEAM observations at 200 - 231 MHz and used false Stokes parameter leakage as a metric to compare the models. We have determined that the FEE model reduced the magnitude and declination-dependent behaviour of false polarisation in Stokes Q and V while retaining low levels of false polarisation in Stokes U.Peer reviewedFinal Accepted Versio

Foregrounds for observations of the cosmological 21 cm line: II. Westerbork observations of the fields around 3C196 and the North Celestial Pole

In the coming years a new insight into galaxy formation and the thermal history of the Universe is expected to come from the detection of the highly redshifted cosmological 21 cm line. The cosmological 21 cm line signal is buried under Galactic and extragalactic foregrounds which are likely to be a few orders of magnitude brighter. Strategies and techniques for effective subtraction of these foreground sources require a detailed knowledge of their structure in both intensity and polarization on the relevant angular scales of 1-30 arcmin. We present results from observations conducted with the Westerbork telescope in the 140-160 MHz range with 2 arcmin resolution in two fields located at intermediate Galactic latitude, centred around the bright quasar 3C196 and the North Celestial Pole. They were observed with the purpose of characterizing the foreground properties in sky areas where actual observations of the cosmological 21 cm line could be carried out. The polarization data were analysed through the rotation measure synthesis technique. We have computed total intensity and polarization angular power spectra. Total intensity maps were carefully calibrated, reaching a high dynamic range, 150000:1 in the case of the 3C196 field. [abridged]Comment: 20 pages, 22 figures, accepted for publication in A&A. A version with full resolution figures is available at http://www.astro.rug.nl/~bernardi/NCP_3C196/bernardi.pd

Prospects for detecting the 21cm forest from the diffuse intergalactic medium with LOFAR

We discuss the feasibility of the detection of the 21cm forest in the diffuse IGM with the radio telescope LOFAR. The optical depth to the 21cm line has been derived using simulations of reionization which include detailed radiative transfer of ionizing photons. We find that the spectra from reionization models with similar total comoving hydrogen ionizing emissivity but different frequency distribution look remarkably similar. Thus, unless the reionization histories are very different from each other (e.g. a predominance of UV vs. x-ray heating) we do not expect to distinguish them by means of observations of the 21cm forest. Because the presence of a strong x-ray background would make the detection of 21cm line absorption impossible, the lack of absorption could be used as a probe of the presence/intensity of the x-ray background and the thermal history of the universe. Along a random line of sight LOFAR could detect a global suppression of the spectrum from z>12, when the IGM is still mostly neutral and cold, in contrast with the more well-defined, albeit broad, absorption features visible at lower redshift. Sharp, strong absorption features associated with rare, high density pockets of gas could be detected also at z~7 along preferential lines of sight.Comment: 12 pages, 13 figures. MNRAS, in pres

Murchison Widefield Array and XMM-Newton observations of the Galactic supernova remnant G5.9+3.1

In this paper we discuss the radio continuum and X-ray properties of the so-far poorly studied Galactic supernova remnant (SNR) G5.9+3.1. We present the radio spectral energy distribution (SED) of the Galactic SNR G5.9+3.1 obtained with the Murchison Widefield Array (MWA). Combining these new observations with the surveys at other radio continuum frequencies, we discuss the integrated radio continuum spectrum of this particular remnant. We have also analyzed an archival XMM-Newton observation, which represents the first detection of X-ray emission from this remnant. The SNR SED is very well explained by a simple power-law relation. The synchrotron radio spectral index of G5.9+3.1, is estimated to be 0.42$\pm$0.03 and the integrated flux density at 1GHz to be around 2.7Jy. Furthermore, we propose that the identified point radio source, located centrally inside the SNR shell, is most probably a compact remnant of the supernova explosion. The shell-like X-ray morphology of G5.9+3.1 as revealed by XMM-Newton broadly matches the spatial distribution of the radio emission, where the radio-bright eastern and western rims are also readily detected in the X-ray while the radio-weak northern and southern rims are weak or absent in the X-ray. Extracted MOS1+MOS2+PN spectra from the whole SNR as well as the north, east, and west rims of the SNR are fit successfully with an optically thin thermal plasma model in collisional ionization equilibrium with a column density N_H~0.80x$10^{22}$ cm$^{-2}$ and fitted temperatures spanning the range kT~0.14-0.23keV for all of the regions. The derived electron number densities n_e for the whole SNR and the rims are also roughly comparable (ranging from ~$0.20f^{-1/2}$ cm$^{-3}$ to ~$0.40f^{-1/2}$ cm$^{-3}$, where f is the volume filling factor). We also estimate the swept-up mass of the X-ray emitting plasma associated with G5.9+3.1 to be ~$46f^{-1/2}M_{\odot}$.Comment: Accepted for publication in A&

Pharmacokinetic studies in children: recommendations for practice and research.

Optimising the dosing of medicines for neonates and children remains a challenge. The importance of pharmacokinetic (PK) and pharmacodynamic (PD) research is recognised both in medicines regulation and paediatric clinical pharmacology, yet there remain barriers to undertaking high-quality PK and PD studies. While these studies are essential in understanding the dose-concentration-effect relationship and should underpin dosing recommendations, this review examines how challenges affecting the design and conduct of paediatric pharmacological studies can be overcome using targeted pharmacometric strategies. Model-based approaches confer benefits at all stages of the drug life-cycle, from identifying the first dose to be used in children, to clinical trial design, and optimising the dosing regimens of older, off-patent medications. To benefit patients, strategies to ensure that new PK, PD and trial data are incorporated into evidence-based dosing recommendations are needed. This review summarises practical strategies to address current challenges, particularly the use of model-based (pharmacometric) approaches in study design and analysis. Recommendations for practice and directions for future paediatric pharmacological research are given, based on current literature and our joint international experience. Success of PK research in children requires a robust infrastructure, with sustainable funding mechanisms at its core, supported by political and regulatory initiatives, and international collaborations. There is a unique opportunity to advance paediatric medicines research at an unprecedented pace, bringing the age of evidence-based paediatric pharmacotherapy into sight